Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01856 ATGGATATTCACACTCCAATGATTACTCAAGGCTGGAACCAACTAAGATCTTTCTATGGAGATCAGTCAGACAAGTTGGTTGTGTTCAAATACGTGGGAAATTCATCTTTCGTAATCCACGTCTCTAAACGTTCTGCAAACACAGGAATCAAGACCAAGTTCCTCAACAATGTTGCCATACGTCGTCCTCTCTCTATGTCAAACTTAATCCATTTTACTGTTGAACTATCCACATACTACTGTCAAGCAAGCCACCTGTATTTGAAGAAAGAATTTGCTACTTATTTCCAAAAGAGTGGACTTTCTTCTGTTGTTTTACATGGACCCAGGGGCAAGGTCGAGTATTTTCAGAAGTGCTTCTCCATTACACGGAAGATGACGACGAAACAGTGCATATTGGGTGATCAATCCATACTTGCAACTAAGTGGAAGGGTGGATTCTTCACTATGTTCATCGAAGAACAGGATTTTGGTGACGTGAACCGATTGTTTGTCATTACATTAGGCCGTGAACTGGGTCCAGTTTGGACAATTTCTGATAACAATGGTAATATGCACCATGTTACCTTCAACATGGATATTTATAATCCAAGGATTACTCATGGGTGGTGTGATATAAGAAAATTCTATGATATAAACAGAGATTTGAATTCAGACTTATGTAAGTATTTTCGCAATAGTAAATTCTCAGAAATTGTGCTTTATGGTCCAAAAGCACAGGTTCAATGCAAGTTGTTAATTAGAGTAAGATCAGTGAAGATTGGCAGTGGATGGAAAAAGTTTTGTGAACTACATGGACTACAGGAAAGAGATATAATACTTCTTGAGGTTGACGGTGAAGAACCAAGCAGCCATCCATACTTTTTTCCAGATCTTCATTGTTTCCATATTAGTGATTCAATTAATGGTTCACTGCTCAATACATCACGCGAAGAGGGTTCTAAAATACATGCTTCCATCAGACGTACTCTAATTTACAAATTCCAGACTGAAATTTCTGAAGGTCATGTTTATGCCATACAAAATTTCAGTGTTGCTCCAAATTCTGGAATATACAGAACTACGCACCACCCTTATAAGATTAATTTCCAGTTTGGTACCAAAGTTAGTTTGCTTGATGGTAACTTGGTTCCTGATGTCAAACCACAATACACACCTTTGTCATTATTGACAACCACTGGATTCGATACTGATTATTTAGTTGATGTATTGGGATTACTGGTCGGAGTGGGTACTGAAAGAGAATTGCAAGTTGATGGAAAGACAACAAAATTAAATGTCATTGCAATAGAAGCTGATGGGTTTCGAATAGAATGTACTTTGTTTGGTATTTATGTCGATGAACTGAATGTATTTCTTTCAAGTGGAGAAGTACAAAATTGTGCTATAAGTATAGAATTTGCGAAAGTCAAAACTTTTCAAGATAAGGTTCAACTTCAAAATTGCAAGTTCTGCACTAGGATTAAGTACAATGTTAACTTCAAGGAGGCATCTGAACTTAAATCAAGGATGATTGAGAACAATGAATCTCCCTCTCAAGGATTAACGCAGTTGTCTCAGACTTCCAAACATACTGTGGAAGAAGACTTTTTAACTCTTACACCTAGGACGACTATTCAAGGTCTTAAAGATTGTAAAGAGGTTGCAACTTTCATATTGTTTGGAACCATTAACCATATCTTGGATGAGGATGACTGGTGGTATACGGCTTGTGTTTGCAACAAAGCTGTTTATCCAGATTCAAAGATGTTCTTTTGCGAGAAGTGTAACAAGCATGTTATAAAAGTCTTTCCAAGATATAGGATTAAGGTTCGAGTTATTGACTCATCCGATTCCACCACATTTGTTCTGTTTGATAGGGATGCAACCACCCTTTTCAAAAAAACCTGTGCTGATATGTTAGAGTCTCATGATAAGATGAATGGTTGTGGGAATTTTCCTAAGGAGTTTGAAGAATTAGTTAATAAAAGTCTGCTGTTTAAAGTTGAAAGTAGGAACGATCAAACTTTCAAACTTGAACAATCTTTCAGAGTGAAGAAAAACAGCGTGTAG 2052 0.3694 MDIHTPMITQGWNQLRSFYGDQSDKLVVFKYVGNSSFVIHVSKRSANTGIKTKFLNNVAIRRPLSMSNLIHFTVELSTYYCQASHLYLKKEFATYFQKSGLSSVVLHGPRGKVEYFQKCFSITRKMTTKQCILGDQSILATKWKGGFFTMFIEEQDFGDVNRLFVITLGRELGPVWTISDNNGNMHHVTFNMDIYNPRITHGWCDIRKFYDINRDLNSDLCKYFRNSKFSEIVLYGPKAQVQCKLLIRVRSVKIGSGWKKFCELHGLQERDIILLEVDGEEPSSHPYFFPDLHCFHISDSINGSLLNTSREEGSKIHASIRRTLIYKFQTEISEGHVYAIQNFSVAPNSGIYRTTHHPYKINFQFGTKVSLLDGNLVPDVKPQYTPLSLLTTTGFDTDYLVDVLGLLVGVGTERELQVDGKTTKLNVIAIEADGFRIECTLFGIYVDELNVFLSSGEVQNCAISIEFAKVKTFQDKVQLQNCKFCTRIKYNVNFKEASELKSRMIENNESPSQGLTQLSQTSKHTVEEDFLTLTPRTTIQGLKDCKEVATFILFGTINHILDEDDWWYTACVCNKAVYPDSKMFFCEKCNKHVIKVFPRYRIKVRVIDSSDSTTFVLFDRDATTLFKKTCADMLESHDKMNGCGNFPKEFEELVNKSLLFKVESRNDQTFKLEQSFRVKKNSV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01856 683 CDD RPA1_DBD_C 551 680 IPR047192 -
Viun3g01856 683 SUPERFAMILY Nucleic acid-binding proteins 393 504 IPR012340 -
Viun3g01856 683 CDD RPA1_DBD_B_like 402 505 - -
Viun3g01856 683 Gene3D - 61 291 IPR015300 -
Viun3g01856 683 Gene3D - 301 373 IPR012340 -
Viun3g01856 683 Pfam Domain of unknown function DUF223 311 373 IPR003871 -
Viun3g01856 683 Gene3D - 377 513 IPR012340 -
Viun3g01856 683 SUPERFAMILY Nucleic acid-binding proteins 311 372 IPR012340 -
Viun3g01856 683 SUPERFAMILY DNA-binding pseudobarrel domain 246 281 IPR015300 -
Viun3g01856 683 Pfam Replication factor-A C terminal domain 554 674 IPR013955 -
Viun3g01856 683 SUPERFAMILY Nucleic acid-binding proteins 534 667 IPR012340 -
Viun3g01856 683 CDD RPA1_DBD_A_like 311 369 - -
Viun3g01856 683 Gene3D - 519 683 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01856 Viun-Chr3 13889048 13895613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01856 311 678 Core DNA Replication Machinery Family AT5G08020 23.980 2.72e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01856 - - vun:114165619 717.227