Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01851 ATGTTCAAGAATTTGCAGAAGCAGCATCAAAGAGAGAGAGAGAAAGAAATGGTGAAAATTTCAGTTGGTGGGTATGATGATGGAGAAGGACCCAGCAACCGCAACCAGAAGCGACGAAGAGAAGAGGAGGACGAAGAAGAAGAACGAAACACGCGACGGAGCTTTGAAATTGTTGACCGTTCAATTGAACTTCAAGAGCGTGAAGATCATCCTCCTGCTCCACCCAATCGTGCTACCCCAAATGGTTCTGCAAGCAATGCCACCAGAGTTCGGTCCATTCCAATCTTCGTTTCAGACCCTGATGTCCTCGATTGCTGCATTTGCTACGAACCCTTGAGTGCTCCTGTCTTCCAGTGTGAGAATGGACACATTGCTTGCTCTAATTGCTGTGTCAGACTCAAGAACAAGTGTCCCATGTGTTTGATGCCAATTGGGTATAACCGTTGTCGGGCGATTGAGAAGGTGTTGGACTCTATTAAAATGTCGTGTCCGAATGCAAATTATGGCTGCACAGAAACATTTTGTTACAGCAAGAAAAACGACCATGAGAAGGAATGCATCTATCTGCCATGTTTATGCCCTCATGCTGGTTGTGATTTTGTTGCCTCATCCAAGGAGTTATTCCTCCACGTCAGCCACAGACATGTAGACTCTGGAACACTGTTTACATATGATAAATTTTTCACAGTCATCTTCAGTGCTGACCAGAAAACAATTGTTCTGCAAGAGAAAAATGATGGTAATCTGTTTATTGTTCACAATAACCATGAGCAGCTGGGACATAAAGTCCGCATTAGCTGCATCGGCCCCAAGTCCATGGGAGAGTTTCAGTATGAAGTTTTGGCTAGGTTTCGAGGAAGCACTCTAATACTGCAATCTTTTACCAAGATCATTCAAGGTCAATATGTTGATCCACCTTCAAATGCGTTCCTTTTGATTCCTTCTGGGGTTTTTGGCCCTCTACAACTGAAACTAGACATTCGCATTAAGTCACATTAA 999 0.4374 MFKNLQKQHQREREKEMVKISVGGYDDGEGPSNRNQKRRREEEDEEEERNTRRSFEIVDRSIELQEREDHPPAPPNRATPNGSASNATRVRSIPIFVSDPDVLDCCICYEPLSAPVFQCENGHIACSNCCVRLKNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCTETFCYSKKNDHEKECIYLPCLCPHAGCDFVASSKELFLHVSHRHVDSGTLFTYDKFFTVIFSADQKTIVLQEKNDGNLFIVHNNHEQLGHKVRISCIGPKSMGEFQYEVLARFRGSTLILQSFTKIIQGQYVDPPSNAFLLIPSGVFGPLQLKLDIRIKSH 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01851 332 CDD RING-HC_SIAHs 103 140 - -
Viun3g01851 332 MobiDBLite consensus disorder prediction 31 73 - -
Viun3g01851 332 ProSiteProfiles Zinc finger SIAH-type profile. 158 216 IPR013010 GO:0008270
Viun3g01851 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 41 331 IPR044286 -
Viun3g01851 332 MobiDBLite consensus disorder prediction 1 86 - -
Viun3g01851 332 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g01851 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 211 IPR013083 -
Viun3g01851 332 SUPERFAMILY TRAF domain-like 158 329 - -
Viun3g01851 332 SUPERFAMILY RING/U-box 104 146 - -
Viun3g01851 332 Pfam Seven in absentia protein family 148 261 IPR018121 GO:0005737|GO:0006511|GO:0007275
Viun3g01851 332 ProSiteProfiles Zinc finger RING-type profile. 105 140 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01851 76 260 C3H Transcription Factor Family AT2G41980 30.890 7.47e-21 89.4