Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01840 ATGGAGTGGAGGCGTCGGACCAAGAAGCAGGTTCAGGCTCAGCCGCGGTTGGAGCGCCTCAACGCCAAAAAGGGCTTCAATTACGAACCACCACCGTCTCCGCCGTCTCCTTCTTCAACCTCTTCTTCATCTCATTTCGATCGCCAAACCAGCTTCCGCCTCTACGGCATCGACGGCGAGTTCGACCGCATCTTCCAGACCTTGGGTCTCTCCGGCCCGGAAGACTTCGCCATCCCAACCGCTGACTGGGAAGCCCGCAAGGCCCGCGTTGCTTCCTCCAACGCCCCCGGGCCCACCCCCACCCCTAACGCGGTTATCCACTCTTCTACCGAGATCCACCCTCTTTCCGTCACCGCTACTTCTGCGGCTACCCTCCAAGACGATGTCGTTTCAGTTCACGTTTCCGTTATTGGTTCCTCCCCTTGGTCCTCCGGGGAGCATGACGCGGGTAGGGGTAGTGTCGGCAGGTTGAGGAACGGAGAAAGGAGCGTGCTTTTCACCGATTCAGGTTCCTTCACTACTTCCCACGATGATGACAGTGACATTGGCGGCGAGAGGGTTAGTTCGGTTTCTAATTCCGCCGCCCCGGATGAGCTGGTTGTGCCTTTTGTTTCCTCCTTTTCCTTTGAGTGGTTCAGACGGACTTTCTCCTCCTGGCAAAAAGGTGACGTCTTGGGAAATGGGTCTTTCGGAACCGTCTATGAAGGCTTCACTGATGAGGGATTCTTTTTTGCGGTGAAGGAGGTGTCTTTGTTGGATGAAGGTAATCAGGGAAAACAGAGCTTTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTAAGTTCGAGCATAAAAACATAGTTCGATATTATGGCTCGGACAAGGACAAAAGTAAATTATATATCTTCCTTGAGCTTATGTCAAAAGGGTCATTAGCAAGTCTCTATCAAAAGTATCGTTTAAACGATTCCCAAGTTTCTGCATACACAAGGCAGATTTTATGTGGCTTGAAGTATCTTCATGATCATAATGTGGTTCACAGGGACATCAAGTGTGCTAATATACTGGTTGATGTAAGTGGGGCTGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAATTTAATGATGTTAGGTCAAGCAAAGGCTCCCCTTACTGGATGGCCCCTGAGGTTGTTAACTTAAAGGACCAAGGTGGTTATGGGTTAGCCGCCGACATATGGAGCTTAGGGTGTACAGTTTTGGAGATGTTGACACGCCAACCTCCTTATTCGGATTTGGAAGGAATGCAAGCATTGTTTCGGATTGGCAAGGGTGAACTTCCAAGTATTCCGGATTATTTATCTAAGGATGCCCAAGATTTCATTCTTGAATGCTTACAAATTAACCCAAATAAACGTCCAACTGCAGCTCAGCTATTGTATCACCCATTTCTAAGGAGAACATTACTGTCTCCCTTGAGTTTTGCTTCTCCACAAAGGAACATGTATCGGTCATAA 1482 0.4865 MEWRRRTKKQVQAQPRLERLNAKKGFNYEPPPSPPSPSSTSSSSHFDRQTSFRLYGIDGEFDRIFQTLGLSGPEDFAIPTADWEARKARVASSNAPGPTPTPNAVIHSSTEIHPLSVTATSAATLQDDVVSVHVSVIGSSPWSSGEHDAGRGSVGRLRNGERSVLFTDSGSFTTSHDDDSDIGGERVSSVSNSAAPDELVVPFVSSFSFEWFRRTFSSWQKGDVLGNGSFGTVYEGFTDEGFFFAVKEVSLLDEGNQGKQSFFQLQQEISLLSKFEHKNIVRYYGSDKDKSKLYIFLELMSKGSLASLYQKYRLNDSQVSAYTRQILCGLKYLHDHNVVHRDIKCANILVDVSGAVKLADFGLAKATKFNDVRSSKGSPYWMAPEVVNLKDQGGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGKGELPSIPDYLSKDAQDFILECLQINPNKRPTAAQLLYHPFLRRTLLSPLSFASPQRNMYRS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01840 493 FunFam Mitogen-activated protein kinase 1, putative, expressed 217 486 - -
Viun3g01840 493 PRINTS Tyrosine kinase catalytic domain signature 399 421 IPR001245 GO:0004672|GO:0006468
Viun3g01840 493 PRINTS Tyrosine kinase catalytic domain signature 297 310 IPR001245 GO:0004672|GO:0006468
Viun3g01840 493 PRINTS Tyrosine kinase catalytic domain signature 442 464 IPR001245 GO:0004672|GO:0006468
Viun3g01840 493 PRINTS Tyrosine kinase catalytic domain signature 332 350 IPR001245 GO:0004672|GO:0006468
Viun3g01840 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Viun3g01840 493 ProSitePatterns Protein kinases ATP-binding region signature. 225 247 IPR017441 GO:0005524
Viun3g01840 493 SUPERFAMILY Protein kinase-like (PK-like) 199 485 IPR011009 -
Viun3g01840 493 Pfam Protein kinase domain 220 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01840 493 ProSiteProfiles Protein kinase domain profile. 219 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01840 493 SMART serkin_6 219 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01840 493 MobiDBLite consensus disorder prediction 1 47 - -
Viun3g01840 493 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 118 477 - -
Viun3g01840 493 Gene3D Transferase(Phosphotransferase) domain 1 217 490 - -
Viun3g01840 493 MobiDBLite consensus disorder prediction 168 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01840 Viun-Chr3 13595937 13601093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01840 4 92 MAP Kinase Kinase Kinase AT4G08500 38.776 4.46e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun3g01840 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01840 - K13414 gmx:100820552 746.117