Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01839 ATGGGTAGAGCCCAAAACCCCACCAACATGGAGATTGATCTCTCTTTGAAGATAGACGCTGATGATGAACAAAAACCAGAAGTTGATGAGCAAATCAAAGAGTGTAACGAGGATGAAGAAATGGCACAGATTCTGGATCATAACAAGGAAGAAGTCCCTGAAGCTGCAGCTGGTGAAATAGAAGATGATGCATCAGTGGTTCAAACATCTTTGCAAGATAACACAAAATCCAAAGAGTTAAGTGTCCTACAAATGGAGATGGAGAGTATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTTGTAGAACAAACAATGAAAGACTATTATGATCTGCAGATGAAATTCTCAGCTATCCAGGAAAACAATAAAAGAAAGGATCATGAAATTTCTCTCTCCCTTCAAGACATTGCCACCACCAGCGGTGAAGGACCATCGAGAATTCTTGAGATCGTGAACAAAAAAATTCAAAGTGCTCCATCTCCTCCAAACACTGATGATGACAGTTTAAGCGAGAGTGAATTGGGTTTATCATTAAGGTTGCAACCAAGCACGAGTCAGAAAGAAAGTGATGTGGGAAACAATAAGGAAGAGAGAAAAGATCTGCAATTGGCAAGTTTTGTATCAGTGCAGAACAAACTACAGCGGACACATGAGTTACCTGGTATCACTACCCATGCTATCTCCCCTCCAAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAATCTGCCACAATGAATGATGGGTGCCAATGGAGAAAATATGGACAGAAAATTGCAAAGGGAAATCCATGTCCAAGAGCCTATTATCGTTGCACTGTAGCCCCAGGCTGCCCCGTTAGGAAACAGGTACAAAGATGCATCGATGACATGTCGATTCTTATTACAACCTACGAAGGGACACATAACCATCCACTCCCTGTGGGTGCAACTGCCATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGATTCAAGCAACCCTATTTCAGATGGCACTTCTAGTTTCACTCAAGCACCTCTTCCTTACAACACCTTCCACCCATTAAACTCGGCTTCAAATTTCAGGAGCATAAACCCCAGTGATCCATCCAAAGGGGTTGTTCTTGATCTCACAAGCAACCTCAGTGAACCACTACGTTTTTCAACCGGTAGCTCCTCCAATACCACAACTGACACACGCTTTTCTTGGATGCAAAACAAATACCAAGGTGGTGGTGCAATCACAATGAACAACAATTTTCACAAGCCTAGACCAGTGGACATTATTCATGATCATAGAATGTGGAAAGGAGAAGAAAGCAAGCCACTTGATGAGAATGTGTCTGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCTGCAGCCATAACATCTCTCATGAATAAAGAGAGCCACACTGCTACTCATCCTATAGGGACTTCGTTTGGTCCTAGAAGTGGCCAAAATGGTAGCTAG 1473 0.4291 MGRAQNPTNMEIDLSLKIDADDEQKPEVDEQIKECNEDEEMAQILDHNKEEVPEAAAGEIEDDASVVQTSLQDNTKSKELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATTSGEGPSRILEIVNKKIQSAPSPPNTDDDSLSESELGLSLRLQPSTSQKESDVGNNKEERKDLQLASFVSVQNKLQRTHELPGITTHAISPPNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDGTSSFTQAPLPYNTFHPLNSASNFRSINPSDPSKGVVLDLTSNLSEPLRFSTGSSSNTTTDTRFSWMQNKYQGGGAITMNNNFHKPRPVDIIHDHRMWKGEESKPLDENVSAIASDPKFRVAVAAAITSLMNKESHTATHPIGTSFGPRSGQNGS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01839 490 MobiDBLite consensus disorder prediction 156 198 - -
Viun3g01839 490 Coils Coil 80 107 - -
Viun3g01839 490 MobiDBLite consensus disorder prediction 1 27 - -
Viun3g01839 490 FunFam probable WRKY transcription factor 31 232 309 - -
Viun3g01839 490 Gene3D WRKY domain 232 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g01839 490 SUPERFAMILY WRKY DNA-binding domain 240 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g01839 490 Pfam WRKY DNA -binding domain 248 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01839 490 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01839 490 MobiDBLite consensus disorder prediction 156 189 - -
Viun3g01839 490 MobiDBLite consensus disorder prediction 470 490 - -
Viun3g01839 490 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g01839 490 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 469 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01839 Viun-Chr3 13585408 13587972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01839 33 370 WRKY Transcription Factor Family AT1G68150 48.148 4.77e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g01839 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01839 - - var:108321024 821.231