Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01801 ATGTCTGATGTGGAAGAGTATCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAATTAAAGGATACGTTTGAAAAGTTTGGCAAGCTTGTTGAGGCAAAGGTTGTTGTTGACAAGTTCTCTGGGCGTTCACGTGGTTTTGGATTTGTCACATTTGATGATAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGGACTATTACTGTTGATAGAGCCCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACAGGGAGCGTGGTCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGGGGCCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGTGGTGGAAGGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTGGAGGTGGTGGTGGTGGTGGTGGTCACTATGGTCCAGATAGAAATGCAGACCGTTCTTCAGGGGGGCGCAGCAGGGATGGCGGTAGTCATGGAGATTCTGGAAATGATCGATATCATCGTGATCGTGCAGGACCATATGAGCGAGAGCGACGGGGATCAGGAGGCTTTCGTTGA 648 0.4877 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGGRYGGRESRYGGSSGGGGGGGGHYGPDRNADRSSGGRSRDGGSHGDSGNDRYHRDRAGPYERERRGSGGFR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01801 215 MobiDBLite consensus disorder prediction 174 215 - -
Viun3g01801 215 MobiDBLite consensus disorder prediction 88 111 - -
Viun3g01801 215 CDD RRM2_NsCP33_like 8 83 - -
Viun3g01801 215 MobiDBLite consensus disorder prediction 76 215 - -
Viun3g01801 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Viun3g01801 215 FunFam Glycine-rich RNA-binding protein RZ1A 1 118 - -
Viun3g01801 215 Gene3D - 2 117 IPR012677 -
Viun3g01801 215 Pfam Zinc knuckle 122 137 IPR001878 GO:0003676|GO:0008270
Viun3g01801 215 SMART rrm1_1 8 81 IPR000504 GO:0003723
Viun3g01801 215 SUPERFAMILY Retrovirus zinc finger-like domains 114 140 IPR036875 GO:0003676|GO:0008270
Viun3g01801 215 Gene3D - 118 182 - -
Viun3g01801 215 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Viun3g01801 215 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
Viun3g01801 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Viun3g01801 215 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 209 - -
Viun3g01801 215 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01801 Viun-Chr3 13283326 13286009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01801 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 2.78e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01801 - - gmx:100815224 293.123