Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01793 ATGGCAGATAACAATGTCAACCTCCCACCTGGCTTTCACTTTTATCCCACAGATGAAGAGCTTGTCGTCCATTTCCTTCAAAGAAAGGCAAATCTTCTACCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCATATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGGACACAAAATAGGGTCACTGGGAATGGTTATTGGATGCCAATGGGAATGGAAGAGCCAGTGATTACAAGCTCAAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTTTTCCATGTGGGAGAAGCCCCTGATGCTAACACCACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGCTTCCTCTAGCAGATCATCCAGAAGAAGACCACAACCAAAACCGGATCACAGTAAATGGGTGATATGTCGAGTTTATGAGCGGGATAACGATGATGATGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAATAAGTTTGCCAAATTAA 573 0.4293 MADNNVNLPPGFHFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVITSSSNKRVGMKKYYVFHVGEAPDANTTNWIMQEYRLLDSASSSRSSRRRPQPKPDHSKWVICRVYERDNDDDDGDGTELSCLDEVFLSLDDLEEISLPN 190
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01793 190 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Viun3g01793 190 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Viun3g01793 190 FunFam NAC domain-containing protein 104 17 161 - -
Viun3g01793 190 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Viun3g01793 190 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Viun3g01793 190 PANTHER NAC TRANSCRIPTION FACTOR 56 8 162 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun3g01793 Viun-Chr3 13165272 13166898 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01793 6 158 NAC Transcription Factor Family AT1G52890 44.099 2.00e-40 137
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g01793 NAM 2.1e-28 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01793 3 13165272 13166898 Viun3g01793 3 13165272 13166898 ECH