Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01783 ATGATAGATCCTACTGGTGCTCTTGATAATTGGAATCCTAATATTTTAACTCCTTGCACATGGTTTCATATTGTTTGCAACGATGAAAAAAGCGTCACCCATTTGTATCTTGGAAATGCAAACCTTTCGGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGAATATCTGGAACTTTATAACAATAACATAACTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAACATTACTGGTCAAATTCCAGAAGAATTAGCCAATCTTAAAAAACTAGAATCCCTGCGCCTCAACAAAAACAGCTTGTCAGGAAAGATTCCTATGGGTTTGACCACCATTGATACACTGATAGTTCTTGACTTATCGTCCAACAACTTAACAGGGAATGTCCCAGCCAATGGTTCATTTTCAAGTTTTACTCCCATCAGTTTTAGCGATAATCTTTTCTTGGTGCAAGCCATTCCAATTTCACCACCCCCTGCACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGTGCTGCACTGTTGTTTGCAGCTCCAGTAATTGTATTTGTTTATTGGAAAAGAAGGAAGCCACCAGATGATTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCGCTGCATGAACTGCTAGTTGCAACAGATGGCTTTAATAACAAAAACATTCTTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGCATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACACCTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAAGGGGCTTGCTTATCTGCATGATCATTGTAACCCAAAGATTATTCATCGTGATATAAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGTCATATACCACCAGAGTATCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCAATTTAGCACGACTTGCCATTAATGATGAGGTTATGTTGCTTGAATGGGTGAAAGCACTTCTAAAGGAGCAGAAGTTGGAGACACTGGTGGATGCAGATTTACAAGGAGATTATGATGAGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTATGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGTTAGAGGGCCAAGGGTTGGAAGAAAAGTGGGATGAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACATTGCTTACGACTCAACTTCAAATATTGCACCAGATGAACTGTCTGGTCCTAGATGA 1719 0.4026 MIDPTGALDNWNPNILTPCTWFHIVCNDEKSVTHLYLGNANLSGQLVPELGQLPNLEYLELYNNNITGEIPNVLGNLTNLLSLDLYSNNITGQIPEELANLKKLESLRLNKNSLSGKIPMGLTTIDTLIVLDLSSNNLTGNVPANGSFSSFTPISFSDNLFLVQAIPISPPPAQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIVFVYWKRRKPPDDFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNILGKGGFGKVYKGRLTNGDLVAVKRLNQERIRSEEKQFQTEVEMISMAVHRNLLRLIGFCMTPTERLLVYPFMVNGSVDSCLRDRPESQPPLQWPVRKRIALGAAKGLAYLHDHCNPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFNLARLAINDEVMLLEWVKALLKEQKLETLVDADLQGDYDEGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDEWGKKEDMIQKNYNPFNLYIAYDSTSNIAPDELSGPR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01783 572 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 535 - -
Viun3g01783 572 FunFam Somatic embryogenesis receptor-like kinase 1 328 545 - -
Viun3g01783 572 Gene3D Ribonuclease Inhibitor 1 168 IPR032675 -
Viun3g01783 572 FunFam Somatic embryogenesis receptor kinase 1 1 176 - -
Viun3g01783 572 ProSiteProfiles Protein kinase domain profile. 251 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01783 572 ProSiteProfiles Leucine-rich repeat profile. 55 78 IPR001611 GO:0005515
Viun3g01783 572 FunFam Somatic embryogenesis receptor kinase 1 220 327 - -
Viun3g01783 572 Gene3D Phosphorylase Kinase; domain 1 220 327 - -
Viun3g01783 572 SUPERFAMILY L domain-like 3 160 - -
Viun3g01783 572 Pfam Leucine rich repeat 54 114 IPR001611 GO:0005515
Viun3g01783 572 Pfam Protein kinase domain 252 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01783 572 SMART serkin_6 251 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01783 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Viun3g01783 572 ProSitePatterns Protein kinases ATP-binding region signature. 257 279 IPR017441 GO:0005524
Viun3g01783 572 Gene3D Transferase(Phosphotransferase) domain 1 328 545 - -
Viun3g01783 572 SUPERFAMILY Protein kinase-like (PK-like) 232 527 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01783 Viun-Chr3 13095286 13100677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01783 1 572 Receptor kinase-like Gene Family AT1G71830 67.121 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g01783 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01783 K13416 - gmx:100804180 853.973