Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01782 ATGATAGATCCTACTGGTGCTCTTGATAATTGGAATCCTAATATTTTAACTCCTTGCACATGGTTTCATATTGTTTGCAACGATGAAAAAAGCGTCACCCATTTTTGCTTGGCCAGGTATCTTGGAAATGCAAACCTTTCGGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGAATATCTGGAACTTTATAACAATAACATAACTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAACATTACTGGTCAAATTCCAGAAGAATTAGCCAATCTTAAAAAACTAGAATCCCTGCGCCTCAACAAAAACAGCTTGTCAGGAAAGATTCCTATGGGTTTGACCACCATTGATACACTGATAGTTCTTGACTTATCGTCCAACAACTTAACAGGGAATGTCCCAGCCAATGGTTCATTTTCAAGTTTTACTCCCATCAGTTTTAGCGATAATCTTTTCTTGGTGCAAGCCATTCCAATTTCACCACCCCCTGCACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGTGCTGCACTGTTGTTTGCAGCTCCAGTAATTGTATTTGTTTATTGGAAAAGAAGGAAGCCACCAGATGATTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCGCTGCATGAACTGCTAGTTGCAACAGATGGCTTTAATAACAAAAACATTCTTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGCATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACACCTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAAGGGGCTTGCTTATCTGCATGATCATTGTAACCCAAAGATTATTCATCGTGATATAAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGTCATATACCACCAGAGTATCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCAATTTAGCACGACTTGCCATTAATGATGAGGTTATGTTGCTTGAATGGGTGAAAGCACTTCTAAAGGAGCAGAAGTTGGAGACACTGGTGGATGCAGATTTACAAGGAGATTATGATGAGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTATGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGTTAGAGGGCCAAGGGTTGGAAGAAAAGTGGGATGAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACATTGCTTACGACTCAACTTCAAATATTGCACCAGATGAACTGTCTGGTCCTAGATGA 1731 0.4038 MIDPTGALDNWNPNILTPCTWFHIVCNDEKSVTHFCLARYLGNANLSGQLVPELGQLPNLEYLELYNNNITGEIPNVLGNLTNLLSLDLYSNNITGQIPEELANLKKLESLRLNKNSLSGKIPMGLTTIDTLIVLDLSSNNLTGNVPANGSFSSFTPISFSDNLFLVQAIPISPPPAQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIVFVYWKRRKPPDDFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNILGKGGFGKVYKGRLTNGDLVAVKRLNQERIRSEEKQFQTEVEMISMAVHRNLLRLIGFCMTPTERLLVYPFMVNGSVDSCLRDRPESQPPLQWPVRKRIALGAAKGLAYLHDHCNPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFNLARLAINDEVMLLEWVKALLKEQKLETLVDADLQGDYDEGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDEWGKKEDMIQKNYNPFNLYIAYDSTSNIAPDELSGPR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01782 576 Gene3D Phosphorylase Kinase; domain 1 224 331 - -
Viun3g01782 576 SUPERFAMILY L domain-like 3 164 - -
Viun3g01782 576 Gene3D Transferase(Phosphotransferase) domain 1 332 549 - -
Viun3g01782 576 Pfam Leucine rich repeat 58 118 IPR001611 GO:0005515
Viun3g01782 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
Viun3g01782 576 FunFam Somatic embryogenesis receptor kinase 1 224 331 - -
Viun3g01782 576 SMART serkin_6 255 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01782 576 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 539 - -
Viun3g01782 576 FunFam Somatic embryogenesis receptor-like kinase 1 332 549 - -
Viun3g01782 576 Gene3D Ribonuclease Inhibitor 1 172 IPR032675 -
Viun3g01782 576 ProSiteProfiles Leucine-rich repeat profile. 59 82 IPR001611 GO:0005515
Viun3g01782 576 ProSiteProfiles Protein kinase domain profile. 255 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01782 576 FunFam Somatic embryogenesis receptor kinase 1 1 180 - -
Viun3g01782 576 SUPERFAMILY Protein kinase-like (PK-like) 236 531 IPR011009 -
Viun3g01782 576 Pfam Protein kinase domain 256 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01782 576 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01782 Viun-Chr3 13095286 13100678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01782 1 576 Receptor kinase-like Gene Family AT1G71830 66.667 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g01782 Pkinase 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01782 K13416 - gmx:100804180 847.425