Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01781 ATGAACAACAAGAAGCGAGTTCCATCTTTGATATGCTTCTATATTCTGTTTTGGACAATTTTGGTGTTTCACTTGGTGCTCTGGGTTTCTGGAAATGCAGAAGGTGATGCCCTTACTGCATTCAAGAAGAATATGATAGATCCTACTGGTGCTCTTGATAATTGGAATCCTAATATTTTAACTCCTTGCACATGGTTTCATATTGTTTGCAACGATGAAAAAAGCGTCACCCATTTTTGCTTGGCCAGGTATCTTGGAAATGCAAACCTTTCGGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGAATATCTGGAACTTTATAACAATAACATAACTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAACATTACTGGTCAAATTCCAGAAGAATTAGCCAATCTTAAAAAACTAGAATCCCTGCGCCTCAACAAAAACAGCTTGTCAGGAAAGATTCCTATGGGTTTGACCACCATTGATACACTGATAGTTCTTGACTTATCGTCCAACAACTTAACAGGGAATGTCCCAGCCAATGGTTCATTTTCAAGTTTTACTCCCATCAGTTTTAGCGATAATCTTTTCTTGGTGCAAGCCATTCCAATTTCACCACCCCCTGCACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGTGCTGCACTGTTGTTTGCAGCTCCAGTAATTGTATTTGTTTATTGGAAAAGAAGGAAGCCACCAGATGATTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCGCTGCATGAACTGCTAGTTGCAACAGATGGCTTTAATAACAAAAACATTCTTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGCATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACACCTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAAGGGGCTTGCTTATCTGCATGATCATTGTAACCCAAAGATTATTCATCGTGATATAAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGTCATATACCACCAGAGTATCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCAATTTAGCACGACTTGCCATTAATGATGAGGTTATGTTGCTTGAATGGGTGAAAGCACTTCTAAAGGAGCAGAAGTTGGAGACACTGGTGGATGCAGATTTACAAGGAGATTATGATGAGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTATGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGTTAGAGGGCCAAGGGTTGGAAGAAAAGTGGGATGAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACATTGCTTACGACTCAACTTCAAATATTGCACCAGATGAACTGTCTGGTCCTAGATGA 1863 0.4031 MNNKKRVPSLICFYILFWTILVFHLVLWVSGNAEGDALTAFKKNMIDPTGALDNWNPNILTPCTWFHIVCNDEKSVTHFCLARYLGNANLSGQLVPELGQLPNLEYLELYNNNITGEIPNVLGNLTNLLSLDLYSNNITGQIPEELANLKKLESLRLNKNSLSGKIPMGLTTIDTLIVLDLSSNNLTGNVPANGSFSSFTPISFSDNLFLVQAIPISPPPAQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIVFVYWKRRKPPDDFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNILGKGGFGKVYKGRLTNGDLVAVKRLNQERIRSEEKQFQTEVEMISMAVHRNLLRLIGFCMTPTERLLVYPFMVNGSVDSCLRDRPESQPPLQWPVRKRIALGAAKGLAYLHDHCNPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFNLARLAINDEVMLLEWVKALLKEQKLETLVDADLQGDYDEGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDEWGKKEDMIQKNYNPFNLYIAYDSTSNIAPDELSGPR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01781 620 ProSiteProfiles Leucine-rich repeat profile. 103 126 IPR001611 GO:0005515
Viun3g01781 620 ProSiteProfiles Protein kinase domain profile. 299 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01781 620 SUPERFAMILY L domain-like 34 208 - -
Viun3g01781 620 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
Viun3g01781 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 583 - -
Viun3g01781 620 Gene3D Transferase(Phosphotransferase) domain 1 376 593 - -
Viun3g01781 620 FunFam Somatic embryogenesis receptor-like kinase 1 376 593 - -
Viun3g01781 620 SUPERFAMILY Protein kinase-like (PK-like) 280 575 IPR011009 -
Viun3g01781 620 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
Viun3g01781 620 SMART serkin_6 299 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01781 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Viun3g01781 620 FunFam Somatic embryogenesis receptor kinase 1 30 224 - -
Viun3g01781 620 Pfam Protein kinase domain 300 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01781 620 Gene3D Ribonuclease Inhibitor 31 216 IPR032675 -
Viun3g01781 620 FunFam Somatic embryogenesis receptor kinase 1 268 375 - -
Viun3g01781 620 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Viun3g01781 620 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01781 Viun-Chr3 13095286 13101131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01781 12 620 Receptor kinase-like Gene Family AT4G33430 64.048 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g01781 Pkinase 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01781 K13416 - gmx:100804180 885.174