Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01780 ATGAACAACAAGAAGCGAGTTCCATCTTTGATATGCTTCTATATTCTGTTTTGGACAATTTTGGTGTTTCACTTGGTGCTCTGGGTTTCTGGAAATGCAGAAGGTGATGCCCTTACTGCATTCAAGAAGAATATGATAGATCCTACTGGTGCTCTTGATAATTGGAATCCTAATATTTTAACTCCTTGCACATGGTTTCATATTGTTTGCAACGATGAAAAAAGCGTCACCCATTTGTATCTTGGAAATGCAAACCTTTCGGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGAATATCTGGAACTTTATAACAATAACATAACTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAACATTACTGGTCAAATTCCAGAAGAATTAGCCAATCTTAAAAAACTAGAATCCCTGCGCCTCAACAAAAACAGCTTGTCAGGAAAGATTCCTATGGGTTTGACCACCATTGATACACTGATAGTTCTTGACTTATCGTCCAACAACTTAACAGGGAATGTCCCAGCCAATGGTTCATTTTCAAGTTTTACTCCCATCAGTTTTAGCGATAATCTTTTCTTGGTGCAAGCCATTCCAATTTCACCACCCCCTGCACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGTGCTGCACTGTTGTTTGCAGCTCCAGTAATTGTATTTGTTTATTGGAAAAGAAGGAAGCCACCAGATGATTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCGCTGCATGAACTGCTAGTTGCAACAGATGGCTTTAATAACAAAAACATTCTTGGTAAAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGCATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACACCTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCCAGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAAGGGGCTTGCTTATCTGCATGATCATTGTAACCCAAAGATTATTCATCGTGATATAAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCAGTTGTAGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGTCATATACCACCAGAGTATCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCAATTTAGCACGACTTGCCATTAATGATGAGGTTATGTTGCTTGAATGGGTGAAAGCACTTCTAAAGGAGCAGAAGTTGGAGACACTGGTGGATGCAGATTTACAAGGAGATTATGATGAGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTATGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGTTAGAGGGCCAAGGGTTGGAAGAAAAGTGGGATGAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACATTGCTTACGACTCAACTTCAAATATTGCACCAGATGAACTGTCTGGTCCTAGATGA 1851 0.4019 MNNKKRVPSLICFYILFWTILVFHLVLWVSGNAEGDALTAFKKNMIDPTGALDNWNPNILTPCTWFHIVCNDEKSVTHLYLGNANLSGQLVPELGQLPNLEYLELYNNNITGEIPNVLGNLTNLLSLDLYSNNITGQIPEELANLKKLESLRLNKNSLSGKIPMGLTTIDTLIVLDLSSNNLTGNVPANGSFSSFTPISFSDNLFLVQAIPISPPPAQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIVFVYWKRRKPPDDFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNILGKGGFGKVYKGRLTNGDLVAVKRLNQERIRSEEKQFQTEVEMISMAVHRNLLRLIGFCMTPTERLLVYPFMVNGSVDSCLRDRPESQPPLQWPVRKRIALGAAKGLAYLHDHCNPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFNLARLAINDEVMLLEWVKALLKEQKLETLVDADLQGDYDEGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDEWGKKEDMIQKNYNPFNLYIAYDSTSNIAPDELSGPR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01780 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Viun3g01780 616 Pfam Protein kinase domain 296 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01780 616 SUPERFAMILY Protein kinase-like (PK-like) 276 571 IPR011009 -
Viun3g01780 616 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Viun3g01780 616 FunFam Somatic embryogenesis receptor kinase 1 264 371 - -
Viun3g01780 616 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Viun3g01780 616 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01780 616 ProSiteProfiles Leucine-rich repeat profile. 99 122 IPR001611 GO:0005515
Viun3g01780 616 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Viun3g01780 616 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01780 616 SUPERFAMILY L domain-like 34 204 - -
Viun3g01780 616 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Viun3g01780 616 FunFam Somatic embryogenesis receptor-like kinase 1 372 589 - -
Viun3g01780 616 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Viun3g01780 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 579 - -
Viun3g01780 616 FunFam Somatic embryogenesis receptor kinase 1 30 220 - -
Viun3g01780 616 Gene3D Transferase(Phosphotransferase) domain 1 372 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01780 Viun-Chr3 13095286 13101131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01780 12 616 Receptor kinase-like Gene Family AT4G33430 64.438 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g01780 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01780 K13416 - gmx:100804180 891.723