Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01779 ATGAAGAAGCAAGTGATTTCATCTTTCAGGTGTTTCTTTCTTCTTTCTGCATTTTTGGTTCTTGACTTCATGGTCAAGGTTTCTGGAAACCAAGAAGGTGATGCCCTGTCTGCATTGAAAGGCAATATGATTGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACTTGCAATAATGACAATAGCGTGATCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTGAGCTCGCTGCACAGCTTGGTCAACTATCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATTCCAATTGAGCTTGGGAGTTTGACAAACTTGGTGAGCTTGGATCTTTACTCGAACAAAATTACTGGTCTCATTCCAGACGAATTAGCCAACCTTAAAAAATTACGTTTCCTGCGTCTCAACAATAATAGCTTGTCAGGAAAAATTCCTGTGAGTCTGACCAATGTCGATAAATTGCAAGTGCTTGATTTATCGATCAACAACTTAACAGGAGATGTCCCAACCAATGGTTCTTTTTCATATTTCACTCCCATCAGTTTTAGGGGTAATCCACTATTGAAAAATGTAACCATTCAATCTCCACCAACTGCCGAACCACCACCAAGTCCTTCAGGTAACAGTAATCGTGTTATTGGAATCATTGCTGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCTGTGATTACACTTGTTTATTGTAAAAGAAGGAAACCACATGACTTTTTCTTTGATGTTGCAGCTGAGGAAGATCCTGAAGTTCACCTTGGTCAGCTTAGAAGGTTTTCACTGCGTGAACTTCAAGTTGCAACAGATTCCTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGAGATCTTGTAGCAGTGAAAAGACTTAAAGAGGAACGAACACAGGGTGGGGAGATGCAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGCATGGTTTTTGCATGACACCTACTGAACGTTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGATCGTCCAGAAGCACAAGCAGCACTTGAATGGTCTAAACGGAAGGGTATTGCTCTAGGAGCTGCAAGGGGACTTGCATATTTGCATGATCATTGTGATCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAAAGATACTCATGTTACTACTGCGGTACGTGGTACTATAGGCCACATTGCACCTGAGTACCTCTCAACTGGGAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTCGATTGGGTGAAAGCACTTTTGAAAGAGAAGAGGTTGGAGACACTGGTGGATGGAGATTTGGATGGAAATTATGAGGAGGAGGAAGTGGAAGAGTTAATCCAAGTGGCCTTGCTATGCACACAAAGCTCCCCTTTCGAAAGACCAAAGATGTCTGAGGTGGTAAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAAAAATGGTGGCAGAAAGAGGATATAATCCAACAAAATTTTGATCCCTCTAGGCTCCACCATGCTTATTGGCCATTATTAGACTCATCTTCAAATATTACCCCAGATGAACTGTCAGGGCCAAGATGA 1860 0.4108 MKKQVISSFRCFFLLSAFLVLDFMVKVSGNQEGDALSALKGNMIDPNNVLQSWDSTLVNPCTWFHVTCNNDNSVIRVDLGNANLSGELAAQLGQLSNLQYLELYSNNITGKIPIELGSLTNLVSLDLYSNKITGLIPDELANLKKLRFLRLNNNSLSGKIPVSLTNVDKLQVLDLSINNLTGDVPTNGSFSYFTPISFRGNPLLKNVTIQSPPTAEPPPSPSGNSNRVIGIIAGGVAVGAALLFAAPVITLVYCKRRKPHDFFFDVAAEEDPEVHLGQLRRFSLRELQVATDSFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSVASCLRDRPEAQAALEWSKRKGIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKEKRLETLVDGDLDGNYEEEEVEELIQVALLCTQSSPFERPKMSEVVRMLEGEGLAEKWEKWWQKEDIIQQNFDPSRLHHAYWPLLDSSSNITPDELSGPR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01779 619 Gene3D Transferase(Phosphotransferase) domain 1 371 588 - -
Viun3g01779 619 FunFam Somatic embryogenesis receptor kinase 1 28 217 - -
Viun3g01779 619 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01779 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 579 - -
Viun3g01779 619 Gene3D Ribonuclease Inhibitor 28 212 IPR032675 -
Viun3g01779 619 Pfam Protein kinase domain 295 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01779 619 FunFam Somatic embryogenesis receptor-like kinase 1 371 589 - -
Viun3g01779 619 Gene3D Phosphorylase Kinase; domain 1 263 370 - -
Viun3g01779 619 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Viun3g01779 619 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Viun3g01779 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Viun3g01779 619 SUPERFAMILY Protein kinase-like (PK-like) 274 569 IPR011009 -
Viun3g01779 619 SMART serkin_6 294 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01779 619 SUPERFAMILY L domain-like 31 202 - -
Viun3g01779 619 Pfam Leucine rich repeat 96 156 IPR001611 GO:0005515
Viun3g01779 619 FunFam Somatic embryogenesis receptor kinase 1 263 370 - -
Viun3g01779 619 SMART LRR_sd22_2 95 116 - -
Viun3g01779 619 SMART LRR_sd22_2 143 169 - -
Viun3g01779 619 SMART LRR_sd22_2 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01779 Viun-Chr3 13074646 13082072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01779 11 619 Receptor kinase-like Gene Family AT4G33430 72.036 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g01779 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01779 K13416 - gmx:100804180 1023.46