LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01778	ATGATTGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACTTGCAATAATGACAATAGCGTGATCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTGAGCTCGCTGCACAGCTTGGTCAACTATCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATTCCAATTGAGCTTGGGAGTTTGACAAACTTGGTGAGCTTGGATCTTTACTCGAACAAAATTACTGGTCTCATTCCAGACGAATTAGCCAACCTTAAAAAATTACGTTTCCTGCGTCTCAACAATAATAGCTTGTCAGGAAAAATTCCTGTGAGTCTGACCAATGTCGATAAATTGCAAGTGCTTGATTTATCGATCAACAACTTAACAGGAGATGTCCCAACCAATGGTTCTTTTTCATATTTCACTCCCATCAGTTTTAGGGGTAATCCACTATTGAAAAATGTAACCATTCAATCTCCACCAACTGCCGAACCACCACCAAGTCCTTCAGGTAACAGTAATCGTGTTATTGGAATCATTGCTGGAGGAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCTGTGATTACACTTGTTTATTGTAAAAGAAGGAAACCACATGACTTTTTCTTTGATGTTGCAGCTGAGGAAGATCCTGAAGTTCACCTTGGTCAGCTTAGAAGGTTTTCACTGCGTGAACTTCAAGTTGCAACAGATTCCTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGAGATCTTGTAGCAGTGAAAAGACTTAAAGAGGAACGAACACAGGGTGGGGAGATGCAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGCATGGTTTTTGCATGACACCTACTGAACGTTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGATCGTCCAGAAGCACAAGCAGCACTTGAATGGTCTAAACGGAAGGGTATTGCTCTAGGAGCTGCAAGGGGACTTGCATATTTGCATGATCATTGTGATCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAAAGATACTCATGTTACTACTGCGGTACGTGGTACTATAGGCCACATTGCACCTGAGTACCTCTCAACTGGGAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTCGATTGGGTGAAAGCACTTTTGAAAGAGAAGAGGTTGGAGACACTGGTGGATGGAGATTTGGATGGAAATTATGAGGAGGAGGAAGTGGAAGAGTTAATCCAAGTGGCCTTGCTATGCACACAAAGCTCCCCTTTCGAAAGACCAAAGATGTCTGAGGTGGTAAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAAAAATGGTGGCAGAAAGAGGATATAATCCAACAAAATTTTGATCCCTCTAGGCTCCACCATGCTTATTGGCCATTATTAGACTCATCTTCAAATATTACCCCAGATGAACTGTCAGGGCCAAGATGA	1734	0.4118	MIDPNNVLQSWDSTLVNPCTWFHVTCNNDNSVIRVDLGNANLSGELAAQLGQLSNLQYLELYSNNITGKIPIELGSLTNLVSLDLYSNKITGLIPDELANLKKLRFLRLNNNSLSGKIPVSLTNVDKLQVLDLSINNLTGDVPTNGSFSYFTPISFRGNPLLKNVTIQSPPTAEPPPSPSGNSNRVIGIIAGGVAVGAALLFAAPVITLVYCKRRKPHDFFFDVAAEEDPEVHLGQLRRFSLRELQVATDSFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSVASCLRDRPEAQAALEWSKRKGIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKEKRLETLVDGDLDGNYEEEEVEELIQVALLCTQSSPFERPKMSEVVRMLEGEGLAEKWEKWWQKEDIIQQNFDPSRLHHAYWPLLDSSSNITPDELSGPR	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01778	577	SUPERFAMILY	Protein kinase-like (PK-like)	232	527	IPR011009	-
	Viun3g01778	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	375	387	IPR008271	GO:0004672\|GO:0006468
	Viun3g01778	577	Gene3D	Transferase(Phosphotransferase) domain 1	329	546	-	-
	Viun3g01778	577	Gene3D	Ribonuclease Inhibitor	1	170	IPR032675	-
	Viun3g01778	577	SMART	LRR_sd22_2	53	74	-	-
	Viun3g01778	577	SMART	LRR_sd22_2	77	98	-	-
	Viun3g01778	577	SMART	LRR_sd22_2	101	127	-	-
	Viun3g01778	577	Pfam	Protein kinase domain	253	524	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01778	577	FunFam	Somatic embryogenesis receptor-like kinase 1	329	547	-	-
	Viun3g01778	577	Gene3D	Phosphorylase Kinase; domain 1	221	328	-	-
	Viun3g01778	577	Pfam	Leucine rich repeat N-terminal domain	3	27	IPR013210	-
	Viun3g01778	577	SMART	serkin_6	252	526	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01778	577	FunFam	Somatic embryogenesis receptor kinase 1	221	328	-	-
	Viun3g01778	577	FunFam	Somatic embryogenesis receptor kinase 1	1	175	-	-
	Viun3g01778	577	ProSitePatterns	Protein kinases ATP-binding region signature.	258	280	IPR017441	GO:0005524
	Viun3g01778	577	SUPERFAMILY	L domain-like	3	160	-	-
	Viun3g01778	577	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	3	537	-	-
	Viun3g01778	577	ProSiteProfiles	Protein kinase domain profile.	252	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01778	577	Pfam	Leucine rich repeat	54	114	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01778	Viun-Chr3	13074646	13082072	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g01778	1	577	Receptor kinase-like Gene Family	AT4G33430	72.364	0.0	848

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Viun3g01778		Pkinase	1.1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01778	K13416		-	gmx:100804180	980.704