Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01753 ATGGCGGAGCGTGGTTCTTACGGATTGGGACCTCGATTAGATCTTCAGCAATTACAACTTGAAGCCCAGAATAGGTGGTTGCGCCCCGCCGAAATATGTGAAATTCTTTGCAATTATCGGATGTTTCAAATCACATCAGAACCACCTACCAGGCCACCAAGTGGCTCCCTTTTTCTCTTTGATCGGAAGGTTTTAAGGTACTTCAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTACGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTGCACTACTTGGATGTTAAGGTTAACAAAACCAATGTTGGTGGAAAAACATATTCTGGTGAGGCCACATCAGATTCCCAGAAGGGAAGTTCTTTGTCATCTGGCTTTCCTAGAAATTATGGCAGTGTGCCTTCAGGAAGTACAGATTCCATGAGCCCAACCAGCACTCTGACGTCTTTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGATCACAATCCTATCATGAATCAAAAAGTTTGGGGAATGATTGCCCTATCGATAAGATTGATGCTCGTTCAAATAGTTCATATCTTATGCATCCATCTTCAGGTGATCCTGCACAGTTTCCAGTTCCTGGAGCAGAATATATCCCACTTGTTCAGGGTCATAGAGCACGCGACATTGGATCATGGGACAATGCCATGGAGCAATCTTCAGGAAACCATACTTCTCCTTCTCTTGTATCATCTACATCCATTCCATCAAGTGCATCGGGAAACATCCTTGAAGAAAACAATGTTGTTCCAGGCAACCTTTTAGGGCGTAAAAATGTCCTCATTGAAGAGGACAGGGTCTCTCAGGCTATCCACTCAAATTGGCAGATTCCTTTTGGAGACGATACAGGAGAATTACCTAAGTGGAGCCTTACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGGCACTAGTTTACTGGGGGATGTAACTGATAATGCAGGCTCAGAAATTCTTGCTGAGATGTTCACTTTTAATGGCGAGTTAAAAGAGAAATCTTTGCACCAAAACATCTCAAAGCAGTATACAAATACACAGTCTCAACCTGCAACAAAATCCAATTCTGATTATGAAGTGGCTGGTGAAGCAAGTATTAATTATACCTTGACCATGAAGCGTGGATTATTGGATAGAGAGGAAAGCTTAAAGAAGGTTGATAGTTTCTCTAGGTGGATTTCTAAAGAATTTGCTGGTGTGGATGATCTGCATACGCAGTCCTCCCCTGGTATTTCATGGAACACAGATGATTGTGGGGATGTGATAGATGATACATCATTAAACCTGTCCCTTTCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTATGGTGACAGCATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTAGCAAATGGAATTCTATGCTGTCAAGCTCCACGTCATAAGATTGGACGGGTTCCCTTCTATGTGACGTGTTCCAATAGGTTTGCCTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAAGGTTTCAACAGAAATATAGATTTTACAGATTTTTTTACCAGTTCAACTGAAATGGTCCTTCATTTGCGTCTGGTGGGGTTACTTTCTTTAAATTCAGTGCACACTTCAAATCAAGTGCTTGAGGATGATATGGAGAAAAGAAACTTAATTTTCAAGCTTATTTCACTGAAAGAGGAAGAAGAATATTCAAGTAGAGAAGAGACAACTGTTGAGATGGATGCCACAAAACACAAGTTGAAGGAGCATATGTTTCACAAGCAGGTTAAAGAGATGTTGTACTCTTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCTTGTATTAAGTGAGGAAGGGCAGGGCGTGTTACATTTAGTTGCTGCTCTTGGTTACGATTGGGCCATAAAACCAATCATAACTGCTGGTGTAAATATCAACTTCCGTGATGTGAGTGGATGGACAGCTCTACATTGGGCTGCATACTGTGGCCGGGAGCGAACAGTTGCAGTCCTTGTGTCCATGGGTGCAGCCACTGCAGCAGTGACAGATCCATGTCCAGAATTTCCTGAAGGTAGAACACCTGCAGATCTTGCTTCTAGCAATGGCCACAAAGGAATTTCCGGTTTTCTTGCAGAGTCATTATTAACTAGCCATCTTGAATTACTCACAATGGAGGAAAGTAAAGATGGTAGGAAAGAGACTTCAGGAATGAAAGCAGTGCAAACAGTTTCAGAGCGAACTGCGACACCTGTGCTTTATGGGGATATACCAGATGTTATCTGCCTTAAGGATTCTCTCAATGCTGTCCGGAATGCTACTCAAGCTGCTGATCGAATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAACAGTTAGCTCAGCAAGATGATGATGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCCCTTTTAGCTTCTAGGATGAGCAAATCTGGACAAGGAGAGGGTTTAGCCAGTGCTGCTGCAATACAAATACAGAAAAAGTTTCGGGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAGAACAATCATATGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGGCGCAAGGGCAGTGGTTTACGTGGATTTCGATCAGATACTGCGAACAAGGTCATCCCTGACAAACCAAGCGAATCTCCGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAAGCAAGATTCCAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGATAATTTGAATTCGATGAATTCTGAAGAGGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTGCCTATTGCTTTCGATTGA 3237 0.4205 MAERGSYGLGPRLDLQQLQLEAQNRWLRPAEICEILCNYRMFQITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNVGGKTYSGEATSDSQKGSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGSQSYHESKSLGNDCPIDKIDARSNSSYLMHPSSGDPAQFPVPGAEYIPLVQGHRARDIGSWDNAMEQSSGNHTSPSLVSSTSIPSSASGNILEENNVVPGNLLGRKNVLIEEDRVSQAIHSNWQIPFGDDTGELPKWSLTQSLGLEFGSDYGTSLLGDVTDNAGSEILAEMFTFNGELKEKSLHQNISKQYTNTQSQPATKSNSDYEVAGEASINYTLTMKRGLLDREESLKKVDSFSRWISKEFAGVDDLHTQSSPGISWNTDDCGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPMVTACNWSCMFGEVEVPAEVLANGILCCQAPRHKIGRVPFYVTCSNRFACSEVREFEYREGFNRNIDFTDFFTSSTEMVLHLRLVGLLSLNSVHTSNQVLEDDMEKRNLIFKLISLKEEEEYSSREETTVEMDATKHKLKEHMFHKQVKEMLYSWLLHKVTETGKGPLVLSEEGQGVLHLVAALGYDWAIKPIITAGVNINFRDVSGWTALHWAAYCGRERTVAVLVSMGAATAAVTDPCPEFPEGRTPADLASSNGHKGISGFLAESLLTSHLELLTMEESKDGRKETSGMKAVQTVSERTATPVLYGDIPDVICLKDSLNAVRNATQAADRIHQVYRMQSFQRKQLAQQDDDDDEFGLSDQQALSLLASRMSKSGQGEGLASAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYRTIIWSVGILEKVILRWRRKGSGLRGFRSDTANKVIPDKPSESPKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGDNLNSMNSEEAVDGVEDLIDIDMLLDDENFLPIAFD 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01753 1078 FunFam Calmodulin-binding transcription activator 2 900 948 - -
Viun3g01753 1078 SMART iq_5 923 945 IPR000048 GO:0005515
Viun3g01753 1078 SMART iq_5 900 922 IPR000048 GO:0005515
Viun3g01753 1078 Pfam IQ calmodulin-binding motif 903 921 IPR000048 GO:0005515
Viun3g01753 1078 Pfam IQ calmodulin-binding motif 926 945 IPR000048 GO:0005515
Viun3g01753 1078 ProSiteProfiles Ankyrin repeat profile. 724 756 IPR002110 GO:0005515
Viun3g01753 1078 SUPERFAMILY E set domains 491 577 IPR014756 -
Viun3g01753 1078 MobiDBLite consensus disorder prediction 146 220 - -
Viun3g01753 1078 Pfam Ankyrin repeats (3 copies) 696 785 IPR002110 GO:0005515
Viun3g01753 1078 ProSiteProfiles IQ motif profile. 901 930 IPR000048 GO:0005515
Viun3g01753 1078 SMART CG_1_2 18 136 IPR005559 GO:0003677
Viun3g01753 1078 SUPERFAMILY Ankyrin repeat 675 784 IPR036770 -
Viun3g01753 1078 Gene3D - 901 948 - -
Viun3g01753 1078 MobiDBLite consensus disorder prediction 146 191 - -
Viun3g01753 1078 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1040 - -
Viun3g01753 1078 ProSiteProfiles Ankyrin repeat region circular profile. 724 749 - -
Viun3g01753 1078 SMART ANK_2a 724 753 IPR002110 GO:0005515
Viun3g01753 1078 SMART ANK_2a 763 792 IPR002110 GO:0005515
Viun3g01753 1078 SMART ANK_2a 691 720 IPR002110 GO:0005515
Viun3g01753 1078 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Viun3g01753 1078 MobiDBLite consensus disorder prediction 972 993 - -
Viun3g01753 1078 Gene3D Immunoglobulins 484 579 IPR013783 -
Viun3g01753 1078 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Viun3g01753 1078 Pfam IPT/TIG domain 491 576 IPR002909 -
Viun3g01753 1078 Gene3D - 634 786 IPR036770 -
Viun3g01753 1078 FunFam Calmodulin-binding transcription activator 2 484 580 - -
Viun3g01753 1078 MobiDBLite consensus disorder prediction 199 213 - -
Viun3g01753 1078 ProSiteProfiles IQ motif profile. 924 948 IPR000048 GO:0005515
Viun3g01753 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 951 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01753 Viun-Chr3 12754981 12765550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01753 1 1059 CAMTA Transcription Factor Family AT5G64220 53.140 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun3g01753 Ank_2 1.6e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01753 K21596 - gmx:100795682 1805.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01753 3 12754981 12765550 Viun6g03069 6 33200771 33212000 PCT