Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01742 ATGGCATTTCTTAAACTTCAATACTTGTTTTTGGCTCTTTTGATTTTCTTTTTCCTTTCAAAACTTACTTTTGCAAAGCAATCAAAGATAAATGGTTTGAAAATGAATGTTATTGATCGATGTTGGAGAAAAAATTCTGAATGGAGGATGCACCGATATCAATTAGCCACATGTTCTGTGGGTTATGCGGGCAAGATGATAAACAACATTGGTAATGACCTTATTCATTATAAAGTTACCGACGCTAGTGATGATCCTATAAATCCCAAGCCCAACACCTTGAGGTATGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGACATGCAAATTAAACTAGAGAAACCCCTTCTCATCAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAACGTCCATATCGCTAATAATGCATGCTTAATGATATTTAAGGCCACTAACATAATTATCCATGGCATTCGAATTCATCATTGTAAACCTCAAGCCCCTGGGATCGTAATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGCCATGTAGATGGGGATGCAATAAGATTGATTACAGCTTCAAGGATTTGGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGATGTAACACGAGGTTCTACTGATGTGACTATCTCTAATAATTGGTTCAAAAATCAAGATAAGGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAGAATATGAAGGTTACAGTGGTGTACAATCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTGTAGCACCAATGATAGGAAATAAGGAGGTAACATGGAGAAAGAGTAGTGATAAAAGTGGAGGTACATGGAACTTTCATTCAATAAGGGATATTTTTGAAAATGGAGCTTCATTCAATATAACAAAAGGAGGAGGTGTACAAAAACCGAATTATACTAAAGAACAAAATTTTAAAGTTCTTGATGCCAAATTCGTGAGATCATTGACACGTTCATCTGGTGTGTTATGA 1137 0.3668 MAFLKLQYLFLALLIFFFLSKLTFAKQSKINGLKMNVIDRCWRKNSEWRMHRYQLATCSVGYAGKMINNIGNDLIHYKVTDASDDPINPKPNTLRYGTSIIQGKVWITFQKDMQIKLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHGIRIHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLITASRIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMEPSLKSEANLFVAPMIGNKEVTWRKSSDKSGGTWNFHSIRDIFENGASFNITKGGGVQKPNYTKEQNFKVLDAKFVRSLTRSSGVL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01742 378 Gene3D - 35 378 IPR012334 -
Viun3g01742 378 PRINTS Pollen allergen Amb family signature 357 378 IPR018082 -
Viun3g01742 378 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Viun3g01742 378 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Viun3g01742 378 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Viun3g01742 378 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Viun3g01742 378 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Viun3g01742 378 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Viun3g01742 378 Pfam Pectate lyase 121 303 IPR002022 -
Viun3g01742 378 PANTHER PECTATE LYASE 18-RELATED 33 378 IPR045032 GO:0030570
Viun3g01742 378 SMART amb_all 112 309 IPR002022 -
Viun3g01742 378 SUPERFAMILY Pectin lyase-like 58 342 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01742 Viun-Chr3 12618376 12619864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01742 66 313 Polysaccharide Lyase AT5G09280 71.774 4.68e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01742 K01728 - gmx:100780437 647.506