Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01736 ATGGAAAATGACGACGTTGAAATGCTCGGTTCTGAAAGCAACGAAGCTGGCTTGGAGCTGGATGACATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTTCTGCTTTGCGGGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTACAAGCTCCTGCTACTGCTGCTTCGAGTCAGAACAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTCGGCAATGTGGACTATTCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACCGTAAACCGAGTCACCATCCGAACTGATAAGTTTGGCCAACCAAAGGGATATGCTTACGTAGAGTTTCTTGAAGTGCAGGCTGTTCAAGAAGCTCTTTCGCTGAATGAATCTGAACTACACGGGCGTCAATTGAAGGTTACTGCTAAGAGGACCAATATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCGTATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGTTCCAAGGTTTAG 561 0.4759 MENDDVEMLGSESNEAGLELDDMKKRLKEMEDEASALREMQAKVEKEMGSVQAPATAASSQNNKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVQAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYQGFRGRAPYAPPFAYAPFGYGSKV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01736 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Viun3g01736 186 MobiDBLite consensus disorder prediction 53 69 - -
Viun3g01736 186 MobiDBLite consensus disorder prediction 1 20 - -
Viun3g01736 186 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 12 158 - -
Viun3g01736 186 SMART rrm1_1 71 142 IPR000504 GO:0003723
Viun3g01736 186 CDD RRM_II_PABPs 71 142 - -
Viun3g01736 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Viun3g01736 186 SUPERFAMILY RNA-binding domain, RBD 59 168 IPR035979 GO:0003676
Viun3g01736 186 Coils Coil 13 47 - -
Viun3g01736 186 Gene3D - 11 143 IPR012677 -
Viun3g01736 186 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01736 Viun-Chr3 12551371 12556578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01736 71 141 Eukaryotic Initiation Factors Gene Family AT2G36660 30.556 1.05e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01736 K14396 - mnt:21400190 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01736 3 12551371 12556578 Viun6g03055 6 33122051 33126475 PCT