Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01716 ATGGAGCTGCATCACAGAAAGTTACTTGAGCTTCCATATCCTCCTGATTTAAAAGATGATAAACAAAGTCCCAATAGCAACCACAAAACCACATACTTGATCGTCTGTTTTTCCGTTGTAGCCGCCGTTTTCGTTGTCCTCTGCTCCTACGCCATCTATGTGAAGTTTTTCTCTCCTAGGAACAGGTCTGTGAGGAGAACCTTGTCACGGCCTCAAACTGAGGAAGATTTGTTGGACGAAGAAGCACATGGCCCTGTGGTTGACCACCCCATCTGGTACATCCGCACCACTGGCCTCCAACAATCAGTGATCGGTGCCATCACCGTTTGCAAGTACAAGAAAGATGAAGGCTTGATTGAAGGGTCGGAATGTTCCGTTTGTTTGAGCGAGTTTGAAGAGGATGAAAGTCTCAGGCTTTTGCCTAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACCTGGCTTAGATCGCATACCAATTGCCCCATGTGCCGTGCTCCTATTGTCACTGACCCCACAAGGGTTCCTTCCATGGACCCCAATGCTTTTGCTTCCAGGTCTTTTGTGGAGATGGAGGTTTCTGAAAGTGGTGATGGAGAAGAACATAATCATGTTCAAGCTCAAGCCCAACATGGTGATGATTTGTTGAGGGGTGAAGAAGAGGAAGAGGTTGAAGTGTGTGAAACTGAGAACATGGCTTCAGAAGTGGTGGCTGTGCAGCCAAGAAGATCGGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCTACTGTTGTGTCAGGAGATTCTCATGGAAATAATTCAAAGAGAATTAAAGGTGGTTGCAGTTCTTCTTCTTCTTCGTCTTCCATCAAGAGGTCACGATCCTTCAATGCCAAGCACTTAATATCATGGTATGGACGCAGCCAGAGAAAGCCAAACCCTCCATTGAGAAGCTTCTGA 957 0.4639 MELHHRKLLELPYPPDLKDDKQSPNSNHKTTYLIVCFSVVAAVFVVLCSYAIYVKFFSPRNRSVRRTLSRPQTEEDLLDEEAHGPVVDHPIWYIRTTGLQQSVIGAITVCKYKKDEGLIEGSECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPNAFASRSFVEMEVSESGDGEEHNHVQAQAQHGDDLLRGEEEEEVEVCETENMASEVVAVQPRRSVSLDSSSAAKISLALATVVSGDSHGNNSKRIKGGCSSSSSSSSIKRSRSFNAKHLISWYGRSQRKPNPPLRSF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01716 318 MobiDBLite consensus disorder prediction 266 292 - -
Viun3g01716 318 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 174 IPR044675 -
Viun3g01716 318 CDD RING-H2_EL5-like 123 166 - -
Viun3g01716 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 173 IPR013083 -
Viun3g01716 318 SMART ring_2 124 165 IPR001841 -
Viun3g01716 318 SUPERFAMILY RING/U-box 115 173 - -
Viun3g01716 318 Pfam Ring finger domain 123 166 IPR001841 -
Viun3g01716 318 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Viun3g01716 318 FunFam RING-H2 finger protein ATL54 99 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01716 Viun-Chr3 12373804 12375402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01716 34 215 C3H Transcription Factor Family AT1G72220 48.168 1.03e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01716 - - vun:114177727 605.134