Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01708 ATGGACGGCGGCGGTGGAGGAAACCGAGCCGAGGCGGAGCGGTGGCTGTACACTGCAAACAAGCTGCTGAGCGCGCGGGACCTGCACGGGGCGCGCTCCTTCGCGATCCGCGCGCGCGAGTCCGACCCGACTTACGAGGCTTCCGAGCACCTCCTGACGGTGATCGACACGCTCCTGGCAGGAGAGTCGCGAATCAACGACCACCACCGCGACTGGTACGGGATCCTCCAAATCCTCCGCTACACCACCAACATGGACCACATCGCCTCCCAGTACCGCCGCCTCGCCCATCTGCTCGATCCCAGCCGCAACCTCTTCGCCTTCGCCAGCCACGCCTTGTCCCTCGTCAACGACGCCTGGTCCGTACTCTCCAATCCTGCCAAGAAAGCCATGTACGACAGCGATCTCCGGCTGCTCACCACTCCGCCGCCGCAGGCCCCGTCGCGTCCTTTTTCTCCTGCACAACCCCAACCCACGCCCAGGAGAAACCCTAGATCGAGGGATGATTCGGCCGAGGCGACTCGGCTGAACTCCAATCGTCCCGAGTCCGCTGAGTCGACTCGGCAGACTGGAACCGTCGAAACCGACGGTGGAACGAGTTTCTGGACCTCGTGCCCTTACTGTTACGTTTTGTATGAATACCCGAAGGGATACGAGGAGTGTACCTTGAGGTGCCAGAGTTGCCGGAGGGGGTTTCATGCAGTGGTGATACGGTCGCCACCGCCGTTGACTGGGAATGACGGTTCCTATTGTAGTTGGGGTTTTCTCCCGTTGGGGTTTTCTGGGGATTCGAAAGACGTGAACGGGTTATCCTCCAATTGGAACCCGTTTTCCCCTTTGTTTCCTTGCCCTTTGAAGGGGTCGTCCTATAGTAAGCCTAAGAGGAACTGGGCTTACTATGATGAAGAAGCTGCCGCCGCGTTTATCGAGTTATCCGACCCCAGTGACGAGGATTCCGGTGATGGAGACTGGAGGGTAGCGAAGAGGAGTGGGAGGAAGAAGACTAGAGTTAGTAAAAATTCTGGTGATGGAAGGAGGGAAACTGTGGGGAGACCTAGGAGGGGTGTCCATACAGGGCATGAGAATGTGGGTTCCGGTGATTCTGCTAGTGTCAAAGCCAATGCTAGTGCCAAAGCCAATGCTAGTGCCAAAGCAAATGTTAGTGCCAAAGCCAATGCTAATGCCAAAGCTAATGCTTCCTTTGCTATGCCTTCTGGTGCGAGGGCGGAGTCTAGTAAGAAGGCTGCGTTGGGTGGTTCGAGGAGAAGAGGTGCTGGAAACTTGGGGAAGTTGGATTTGAATGTGGAGTTCAGCAATGAGGTGGAGGAGCCTTCCCGTGGAGTACGCGATCGCGAAGGGAATGCTGCTGGACATGCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGCCTTGATGAGTTCCTCAGTAGCTTGCCCATTCTCAATGTTGTGGCAGATGATAAGGTTAAGGGTCATTAG 1482 0.5628 MDGGGGGNRAEAERWLYTANKLLSARDLHGARSFAIRARESDPTYEASEHLLTVIDTLLAGESRINDHHRDWYGILQILRYTTNMDHIASQYRRLAHLLDPSRNLFAFASHALSLVNDAWSVLSNPAKKAMYDSDLRLLTTPPPQAPSRPFSPAQPQPTPRRNPRSRDDSAEATRLNSNRPESAESTRQTGTVETDGGTSFWTSCPYCYVLYEYPKGYEECTLRCQSCRRGFHAVVIRSPPPLTGNDGSYCSWGFLPLGFSGDSKDVNGLSSNWNPFSPLFPCPLKGSSYSKPKRNWAYYDEEAAAAFIELSDPSDEDSGDGDWRVAKRSGRKKTRVSKNSGDGRRETVGRPRRGVHTGHENVGSGDSASVKANASAKANASAKANVSAKANANAKANASFAMPSGARAESSKKAALGGSRRRGAGNLGKLDLNVEFSNEVEEPSRGVRDREGNAAGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01708 493 MobiDBLite consensus disorder prediction 399 425 - -
Viun3g01708 493 MobiDBLite consensus disorder prediction 143 160 - -
Viun3g01708 493 SMART dnaj_3 70 128 IPR001623 -
Viun3g01708 493 MobiDBLite consensus disorder prediction 336 360 - -
Viun3g01708 493 Pfam DnaJ domain 71 133 IPR001623 -
Viun3g01708 493 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 355 - -
Viun3g01708 493 MobiDBLite consensus disorder prediction 137 195 - -
Viun3g01708 493 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Viun3g01708 493 MobiDBLite consensus disorder prediction 176 195 - -
Viun3g01708 493 SUPERFAMILY Chaperone J-domain 67 136 IPR036869 -
Viun3g01708 493 CDD DnaJ 71 125 IPR001623 -
Viun3g01708 493 Gene3D DnaJ domain 65 140 IPR036869 -
Viun3g01708 493 MobiDBLite consensus disorder prediction 311 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01708 Viun-Chr3 11986700 11988598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01708 11 492 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 42.626 1.28e-107 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01708 - - var:108324594 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01708 3 11986700 11988598 Viun6g03022 6 32961565 32963567 PCT