Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01707 ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCGAGGCAAGTGACTTTCTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTTTTTGATTATGCCAGTTCAAGTATGCAGCAAGTAATTGAAAGGCGCGATCGTCATTCAGCAATGCATAGATTGGATCGTCCCTCTATGGAGCTTCAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAATCATGAATTGAGGCATTTGAATGGTGAGGATCTGCAAGGATTGACACTGCAAGAACTACAGAAAATTGAGGAACATCTTAAAAGAGGTTTGACCAATGTTTCAAAAGTAAAGGATGAAAAAGTTATGCAAGAGATCAACAACCTTAAAAGAAAGGGTGCGGAACTAATGCAGGAAAACCAAAGATTGAAACAGGTGCCAAGCCTTATCCATTTACACAGGCAATCATCGGAATCCATTATTAGCAATTCATCTAATCTTCCTGAAGATGGTTGTAGTGACACATCTCTCAAGTTGGGGTTACCTTAA 615 0.4016 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYASSSMQQVIERRDRHSAMHRLDRPSMELQIESDSNDILRKKVEDKNHELRHLNGEDLQGLTLQELQKIEEHLKRGLTNVSKVKDEKVMQEINNLKRKGAELMQENQRLKQVPSLIHLHRQSSESIISNSSNLPEDGCSDTSLKLGLP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01707 204 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g01707 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g01707 204 MobiDBLite consensus disorder prediction 181 204 - -
Viun3g01707 204 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Viun3g01707 204 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Viun3g01707 204 Coils Coil 92 112 - -
Viun3g01707 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g01707 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g01707 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g01707 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun3g01707 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g01707 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Viun3g01707 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun3g01707 204 Pfam K-box region 93 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g01707 204 FunFam Transcription factor, MADS-box 13 82 - -
Viun3g01707 204 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Viun3g01707 204 Coils Coil 141 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01707 Viun-Chr3 11932172 11942243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01707 1 204 MADS-box Gene Family AT2G22540 48.101 9.26e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun3g01707 K-box 3.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01707 - - gmx:100815814 348.977