Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01686 ATGGATACGCTGAATAATCGCAGCCAGAACGGAGAAGACCACCCTCCGCCGCTGCCGGTGGCTGCACTTCCTATGCATGTGGATGCTTTCCATTATGCCAATGGTTCCGATGGAGGGGAAGAAGCAGCAGCTGCTCCACTGGGCCATGCTTCCTCTGCTGTGCACGCCAGAACCAGTGAACTCACCATTTCTTTTGAGGGCGAAGTTTATGTTTTCCCTGCTGTTACCCCACAAAAGGTGCAGGCTGTATTATTACTGTTGGGAGGGCAGGAGGCGCCAAATACTGTTCCCACCTCAGACTTTTCGTTGCAGCAAATCAGTCAGGACATTAGGGAAATAAATGATCCTTCCCGGTGTTCAAAGCTTTCCCGAAGAATTGCCTCGCTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGATACTCATGCCGTAAAGAGGTTGCCCAGAGGATGCATCGAAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTTATGCTGAAAACTGGGATTCAAGCAATGCTACTCCTGGCCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCTAATAAAGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATCCTTGTGCCAAGCAAGACAAAGAGGGAAGCCCCGAGGAAACAAAGCCTGTGCAAATAGATTCCAGACGATCACCTGAAAAGACAAATGAGCAGTTTATCATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTGGTCTACATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCTGGGACTGAGTTTGAGATTCCCGCTGGTTTTGATGAACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGTGA 1071 0.4641 MDTLNNRSQNGEDHPPPLPVAALPMHVDAFHYANGSDGGEEAAAAPLGHASSAVHARTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQEAPNTVPTSDFSLQQISQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSYAENWDSSNATPGPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNELDTSADIKPSKAEAEHPCAKQDKEGSPEETKPVQIDSRRSPEKTNEQFIIGTAESVTDNLSIQVENHALGLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01686 356 MobiDBLite consensus disorder prediction 251 290 - -
Viun3g01686 356 ProSitePatterns GATA-type zinc finger domain. 194 221 IPR000679 GO:0006355|GO:0043565
Viun3g01686 356 Gene3D - 186 246 IPR013088 GO:0006355|GO:0008270
Viun3g01686 356 SMART tify_2 54 89 IPR010399 -
Viun3g01686 356 Pfam GATA zinc finger 194 230 IPR000679 GO:0006355|GO:0043565
Viun3g01686 356 Pfam CCT motif 125 166 IPR010402 GO:0005515
Viun3g01686 356 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 242 - -
Viun3g01686 356 PANTHER GATA TRANSCRIPTION FACTOR 28 44 335 IPR045280 GO:0006355
Viun3g01686 356 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g01686 356 Pfam tify domain 57 88 IPR010399 -
Viun3g01686 356 MobiDBLite consensus disorder prediction 251 289 - -
Viun3g01686 356 ProSiteProfiles GATA-type zinc finger domain profile. 188 245 IPR000679 GO:0006355|GO:0043565
Viun3g01686 356 CDD ZnF_GATA 193 236 IPR000679 GO:0006355|GO:0043565
Viun3g01686 356 ProSiteProfiles Tify domain profile. 54 89 IPR010399 -
Viun3g01686 356 ProSiteProfiles CCT domain profile. 125 167 IPR010402 GO:0005515
Viun3g01686 356 SMART GATA_3 188 241 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01686 Viun-Chr3 11740328 11746200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01686 60 237 Tify Gene Family AT1G51600 57.527 4.24e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun3g01686 CCT 4.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01686 - - gmx:102669848 587.415