Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01680 ATGTCTTATTTCTGGTTTCTTAAACTCATCGTCAAGTGCCTTGATCATTGCGCATGGCCTGTTCTTGCTCTGGGGTACCCTTTATGTGCTTCTGTACAAGCAATTGAGACCAATTCCTATAGAGAAACCAAGGATTTGATATCGTATTGGATACTCCTCTCGCTGATATACATACTTGAGTATGTTTTTTCTGGGCCTCTTGAATGGAACCCGTTCTGGCCTTACACGAAGCTAATGATCATCTTCTGGCTCGTTGTGCCAGACTTTGGACGGGCTTCTTATGCCTACAATAATATTATTCGAACATGCCTCTCAAATCCAGAAGCAATCATACGTAGTTTCAATAACTGGAGGAAGTCTTTTGTCAAGAAAGATAACTTTTTAGTGCATGCAGAGAGATATTTGGAAGAGTATGGAACAGAAGCCTTAATGAAACTCATTGCTAGCAAGACAAATGGAGAAGAGATCCAAACAGAGCACAAAGCCACTAAAGATTCGGAGGTGATCGTGAAAAAAGAAATTCCTACAGACATCCAATATGTTCCTGTGGTGCGTGAACTTGAGCAAAGTGAGAATGGTTCAGCAAGCATGTTGGAAACTGTAGGAACTGCTGCCATGAAAGAGGTTGGTGAGAGTTCTACACAGAAGGAAGTTAAAGTTCAGAAGGAGTGGACTTGCGCTCTATGCCATGTAACAACATCGAGCGAGAAAACCTTGAATTCACACCTGCAAGGAAGCAAACACTTGGCCATGTTGATTGGTCTGAAGACAAAGAATCAACCTGTTTCACAGAAGAATCTGCAAAAGAAACCTGCTGGGGTGAATATTAAAGAAGTAATATGTGAAATCTGTAATGTGAAATGCCCTTGCGAGATTACCTTCGCCTCTCACAGAAATGGGAAGAAGCATTTGGCTAAAGTTCAAAGTTTATTCTGA 936 0.4124 MSYFWFLKLIVKCLDHCAWPVLALGYPLCASVQAIETNSYRETKDLISYWILLSLIYILEYVFSGPLEWNPFWPYTKLMIIFWLVVPDFGRASYAYNNIIRTCLSNPEAIIRSFNNWRKSFVKKDNFLVHAERYLEEYGTEALMKLIASKTNGEEIQTEHKATKDSEVIVKKEIPTDIQYVPVVRELEQSENGSASMLETVGTAAMKEVGESSTQKEVKVQKEWTCALCHVTTSSEKTLNSHLQGSKHLAMLIGLKTKNQPVSQKNLQKKPAGVNIKEVICEICNVKCPCEITFASHRNGKKHLAKVQSLF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01680 311 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Viun3g01680 311 SUPERFAMILY beta-beta-alpha zinc fingers 264 309 IPR036236 -
Viun3g01680 311 SMART ZnF_U1_5 221 255 IPR003604 GO:0003676|GO:0008270
Viun3g01680 311 SMART ZnF_U1_5 276 310 IPR003604 GO:0003676|GO:0008270
Viun3g01680 311 SUPERFAMILY beta-beta-alpha zinc fingers 204 260 IPR036236 -
Viun3g01680 311 Gene3D Classic Zinc Finger 205 253 - -
Viun3g01680 311 Gene3D Classic Zinc Finger 255 309 - -
Viun3g01680 311 PANTHER HVA22-LIKE PROTEINS 10 137 IPR004345 -
Viun3g01680 311 Pfam Zinc-finger of C2H2 type 281 303 - -
Viun3g01680 311 Pfam Zinc-finger of C2H2 type 224 248 - -
Viun3g01680 311 SMART c2h2final6 224 248 IPR013087 -
Viun3g01680 311 SMART c2h2final6 279 303 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01680 Viun-Chr3 11668165 11670882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01680 210 310 C2H2 Transcription Factor Family AT2G19380 30.579 1.59e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01680 - - vun:114176990 618.616