Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01679 ATGTCTTATTTCTGGTTTCTTAAACTCATCGTCAAGTGCCTTGATCATTGCGCATGGCCTGTTCTTGCTCTGGGGTACCCTTTATGTGCTTCTGTACAAGCAATTGAGACCAATTCCTATAGAGAAACCAAGGATTTGATATCGTATTGGATACTCCTCTCGCTGATATACATACTTGAGTATGTTTTTTCTGGGCCTCTTGAATGGAACCCGTTCTGGCCTTACACGAAGCTAATGATCATCTTCTGGCTCGTTGTGCCAGACTTTGGACGGGCTTCTTATGCCTACAATAATATTATTCGAACATGCCTCTCAAATCCAGAAGCAATCATACGTAGTTTCAATAACTGGAGGAAGTCTTTTGTCAAGAAAGATAACTTTTTAGTGCATGCAGAGAGATATTTGGAAGAGTATGGAACAGAAGCCTTAATGAAACTCATTGCTAGCAAGACAAATGGAGAAGAGATCCAAACAGAGCACAAAGCCACTAAAGATTCGGAGGTGATCGTGAAAAAAGAAATTCCTACAGACATCCAAGTAAAGTATGTTCCTGTGGTGCGTGAACTTGAGCAAAGTGAGAATGGTTCAGCAAGCATGTTGGAAACTGTAGGAACTGCTGCCATGAAAGAGGTTGGTGAGAGTTCTACACAGAAGGAAGTTAAAGTTCAGAAGGAGTGGACTTGCGCTCTATGCCATGTAACAACATCGAGCGAGAAAACCTTGAATTCACACCTGCAAGGAAGCAAACACTTGGCCATGTTGATTGGTCTGAAGACAAAGAATCAACCTGTTTCACAGAAGAATCTGCAAAAGAAACCTGCTGGGGTGAATATTAAAGAAGTAATATGTGAAATCTGTAATGTGAAATGCCCTTGCGAGATTACCTTCGCCTCTCACAGAAATGGGAAGAAGCATTTGGCTAAAGTTCAAAGTTTATTCTGA 942 0.4119 MSYFWFLKLIVKCLDHCAWPVLALGYPLCASVQAIETNSYRETKDLISYWILLSLIYILEYVFSGPLEWNPFWPYTKLMIIFWLVVPDFGRASYAYNNIIRTCLSNPEAIIRSFNNWRKSFVKKDNFLVHAERYLEEYGTEALMKLIASKTNGEEIQTEHKATKDSEVIVKKEIPTDIQVKYVPVVRELEQSENGSASMLETVGTAAMKEVGESSTQKEVKVQKEWTCALCHVTTSSEKTLNSHLQGSKHLAMLIGLKTKNQPVSQKNLQKKPAGVNIKEVICEICNVKCPCEITFASHRNGKKHLAKVQSLF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01679 313 SUPERFAMILY beta-beta-alpha zinc fingers 206 262 IPR036236 -
Viun3g01679 313 SUPERFAMILY beta-beta-alpha zinc fingers 266 311 IPR036236 -
Viun3g01679 313 Gene3D Classic Zinc Finger 257 311 - -
Viun3g01679 313 Gene3D Classic Zinc Finger 207 255 - -
Viun3g01679 313 SMART c2h2final6 281 305 IPR013087 -
Viun3g01679 313 SMART c2h2final6 226 250 IPR013087 -
Viun3g01679 313 Pfam Zinc-finger of C2H2 type 283 305 - -
Viun3g01679 313 Pfam Zinc-finger of C2H2 type 226 250 - -
Viun3g01679 313 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Viun3g01679 313 PANTHER HVA22-LIKE PROTEINS 10 137 IPR004345 -
Viun3g01679 313 SMART ZnF_U1_5 223 257 IPR003604 GO:0003676|GO:0008270
Viun3g01679 313 SMART ZnF_U1_5 278 312 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01679 Viun-Chr3 11668165 11670884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01679 212 312 C2H2 Transcription Factor Family AT2G19380 30.579 1.49e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01679 - - vun:114176990 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01679 3 11668165 11670884 Viun3g01679 3 11668165 11670884 ECH