LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01676	ATGTTAAACAACAAAACAAGTATCATTAACTACAACTCCAGAAGCACCTACCCCAACCAAAACCATATTTGTGGTATTCCATTTTCCATTGCACCCAACATCATTTCTCCAGTCATGGCAGCATCTTGCTACTGTAAGAAAAGTTATGTACATGCTTTTTTTCATGTAACATTAACACTCTTGCTTCTCGTAACACCTCATGCAGCTTCATTAGAATTCAACTATCAGCAAGTTGGTTACACTGTAAACGACTTCATTTTCTCGGGAGATGTTAAAGCTCAGGAAGGAATCCTCCAACTCACCATTCCTAAGCCAGATAGTTATGGTAGAGTGGTATATAACAAATTATTGCATCTTTGGGACAAGAGCTCAGGAAAGGTTGCAGATTTCACTACCCAATTCTATTTTACCATCAACGCCGGAAATGAAACCAAGCCGGGAGATGGAATCACCTTCTTTCTCGCAGATCCAAAGTTTCCAGACTCTGAAATAGATGGAAGTGGTATTGGTCTCGCTAGCCGTACGCAACTGAGGACTAAAAATTACGCAAAGGATTATCCTTTTGTAGCAGTGGAATTTGATACCATGGCTAATGACTGGGATCCGAAATATGATCATGTGGGTATCGATGTCAATGCTATTAACACTACTCACACTACAGAGTGGTACACTAGCATGGATGAAAGAGGGTATGATGCTGAAATTACTTTTGAATCTGCGTCAAACAGATTAAGTGCCACCTTCACTGGATATAAGAATAATTCCAAATTTGAACAGACCTTGTTCGCAGTGGTCAATTTGAGTGATATCTTACCTGAATGGGTTGAATTTGGTTTCTCTTCGGCAACAGGATACACTTATGAGGAACATACTCTTAGTTCATGGTCCTTCAACTCTAGTTTGGAGATTGAACAAGACAAGGGTGGAAGCAAAAGAGGGCTGGTGATAGGGCTGAGCGTTGGACTTGGAGTAGGTGTTTTAATTGCTCTTTTGGGGGTAGCTTTTCTTGTGAGATGGATGCTGAGGACTAGAGGAAGAGAAGATGTCTCCCTTTTCGACCATGCTATGGACAATGATTTCGAAAAAGTCTCTGTACCCAAGAAGTTTTCCCATGAAGAACTGGCCAGAGCAACTAATAACTTCGCAACAGAAAACAAAATAGGACAGGGAGGTTTTGGGGCCGTCTACAGGGGATTTATAAGAGAGTTGAACACCTATGTTGCCATCAAGAAGGTGTCTCGTGGATCTAGACAAGGGGTGAAAGAGTATATGTCTGAAGTAAAGATCTTTGGTCAACTGAGGCATAAGAATTTGGTTCAACTCTTTGGGTGGTGCCATCAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTGACATGGAAGGTGAGATATAATATTGCCAGAGGGTTGGCATCAGCATTGTTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCACAGAGACATAAAATCCAGCAATGTTATGTTGGATTCTAATTTTAACACAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGGATCATGGGACAGGATCCAAAACAACTGGTTTAGCAGGAACAATCGGGTATTTGCCTCCTGAAGCTACCACAAGAGGCAAGGCTAGTAGGGAATCTGATGTATTCAGCTTTGGAGTAGTGGCTTTGGAGATAGCATGTGGTAGAAAAGCAATTGAATCTAATATGAAGGAAGAACAGATATATTTGGTGGATTGGGTTTTGGAACTCCATAGCATTGGTGAAGTCCTTAAAGCCTCTGATCCAAGCTTATATGGACACTTTGATGAGAAGGAAATGGAGACGTTGATGATAGTTGGGCTTTGGTGCACTCACACAGAGTACCTCCAGAGACCTACCATTAGGCAAGTTGTTCAGATGCTTAATTTTGAAGCTCCATTGCCCATTCTCACACAAAGAGGATCAGTCTATAATGCATCTTTCAGTTCTATGGCTTCTAGGACTCATGCTTTTGCGAATAACCAACCTCTGTCTTCAACTTCAAGCAGTAGTGTATTCACAGGATCCTCACAATCCACCACAACTCTTGAAATCATTACTCCAACAGCTGCACATTTGCATACCTACTGA	2157	0.4159	MLNNKTSIINYNSRSTYPNQNHICGIPFSIAPNIISPVMAASCYCKKSYVHAFFHVTLTLLLLVTPHAASLEFNYQQVGYTVNDFIFSGDVKAQEGILQLTIPKPDSYGRVVYNKLLHLWDKSSGKVADFTTQFYFTINAGNETKPGDGITFFLADPKFPDSEIDGSGIGLASRTQLRTKNYAKDYPFVAVEFDTMANDWDPKYDHVGIDVNAINTTHTTEWYTSMDERGYDAEITFESASNRLSATFTGYKNNSKFEQTLFAVVNLSDILPEWVEFGFSSATGYTYEEHTLSSWSFNSSLEIEQDKGGSKRGLVIGLSVGLGVGVLIALLGVAFLVRWMLRTRGREDVSLFDHAMDNDFEKVSVPKKFSHEELARATNNFATENKIGQGGFGAVYRGFIRELNTYVAIKKVSRGSRQGVKEYMSEVKIFGQLRHKNLVQLFGWCHQHEDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFNTKLGDFGLARLMDHGTGSKTTGLAGTIGYLPPEATTRGKASRESDVFSFGVVALEIACGRKAIESNMKEEQIYLVDWVLELHSIGEVLKASDPSLYGHFDEKEMETLMIVGLWCTHTEYLQRPTIRQVVQMLNFEAPLPILTQRGSVYNASFSSMASRTHAFANNQPLSSTSSSSVFTGSSQSTTTLEIITPTAAHLHTY	718

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01676	718	SMART	serkin_6	381	652	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01676	718	Gene3D	-	68	317	-	-
	Viun3g01676	718	CDD	lectin_legume_LecRK_Arcelin_ConA	71	301	IPR001220	GO:0030246
	Viun3g01676	718	Pfam	Protein kinase domain	382	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01676	718	ProSiteProfiles	Protein kinase domain profile.	381	659	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01676	718	Gene3D	Transferase(Phosphotransferase) domain 1	458	666	-	-
	Viun3g01676	718	Pfam	Legume lectin domain	70	308	IPR001220	GO:0030246
	Viun3g01676	718	FunFam	Lectin-domain containing receptor kinase A4.3	458	669	-	-
	Viun3g01676	718	FunFam	L-type lectin-domain containing receptor kinase IX.1	366	457	-	-
	Viun3g01676	718	Gene3D	Phosphorylase Kinase; domain 1	366	457	-	-
	Viun3g01676	718	SUPERFAMILY	Protein kinase-like (PK-like)	365	661	IPR011009	-
	Viun3g01676	718	CDD	STKc_IRAK	387	651	-	-
	Viun3g01676	718	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	501	513	IPR008271	GO:0004672\|GO:0006468
	Viun3g01676	718	SUPERFAMILY	Concanavalin A-like lectins/glucanases	69	302	IPR013320	-
	Viun3g01676	718	ProSitePatterns	Protein kinases ATP-binding region signature.	387	411	IPR017441	GO:0005524
	Viun3g01676	718	ProSitePatterns	Legume lectins beta-chain signature.	189	195	IPR019825	-
	Viun3g01676	718	PANTHER	-	95	655	-	-
	Viun3g01676	718	ProSitePatterns	Legume lectins alpha-chain signature.	271	280	IPR000985	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01676	Viun-Chr3	11633312	11635807	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g01676	56	665	Receptor kinase-like Gene Family	AT5G10530	44.569	9.69e-168	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun3g01676		Pkinase	1.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01676	-		-	gmx:100817213	1011.91