LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01675	ATGGAGGCCAGAATGAATTCTCCAGCCATGGCAGCATCTCAGTACTGCAAGAACATTTATGTACGTGTTTCTTTTCATGTAACATTAACACTCTTGCTTTTTGTAATACACCATGCAGCTTCATTAGAGTTCAACTATCAGCAACTTGGTGACCATGGAGACTTCTTCAATACTTCGGGAGATGTTAAACCTCAAGAAGGAGTGCTCAAACTCACCAACAATGAAACATTCAGTTATGGTAGAGTCATATATCACAAACTATTGAATCTTTGGGACAAAAACTCAGGGAAAGTCACGGATTTCACTACCCGTTTCTCCTTTAGAATCAACGCCGCAAATCAAACCCTAGCAGATGGCATCGCCTTCTTTCTGGCACACCCAAACCTTCCAGAGTCCCAAAGAGATGGAGCTGGTTTTGGTCTTGCCAGCCGTGATCAACTGAGTACTCTAAACTACCCAAAGGACTTTCCTTTTGTAGCAGTGGAATTTGATACCTATGTTAATGGATGGGATCCTAATTATCCCCATGTGGGTATCGATGTTAATTTAATCGCCAGTTCTGACACTGCACAGTGGTTCACCGGCTTGGATGAGAGAGGATATGATGCTGATATTAGTTTCGATTCCAGTTCAAACAAATTGAGCGTCACCTTCAGTGGGTATAAAGATGGCGTCGTAGTTAAAGGGAACCTATCCTCTGTGGTCAATCTGAAAGATGTCTTACCTGAATGGGTTGAATTTGGGTTTTCTGCAGCAACAGGGATTTATTTCAACGAATATGCTCTTAGCTCGTGGTCCTTCAACTCTAGTTTAGACACGGAACCACAAAAGGGTGGAAGCAAAAGAAGGCTGGTCATAGGGCTGAGCCTTGGACTTGGTGCAGCTATTTTAATTGTTATTGTGGGGGTAACTTTTCTTGTGAGATGGATGCTGAGGACTACAGGTATGGAAGATACCTCACTTTTTGACCATGCCATGGACCATGATTTCGAAAAAGTCTCTCTACCCAAGAGGTTTTCCTATGAAGAACTAGCCACAGCAACTAATAACTTCGCAACAGAAAACAAAATAGGACAGGGAGGTTTTGGAGCCGTCTACATGGGATTTATGAGAGAGTTGAATACCTATGTTGCTATCAAGAAGGTATCTCGAGGATCTAGACAAGGGGTGAAAGAGTATATGTCTGAAGTAAAGATCTTTGGTCAACTGAGGCATAAGAATTTGGTTCAACTCTTTGGGTGGTGCCATCAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTGACATGGAAGGTGAGATATAATATTGCGAGAGGGTTGGCATCAGCATTGTTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCACAGAGACATAAAATCCAGCAATGTTATGTTGGATTCTAATTTTAACACAAAGCTTGGAGATTTTGGGTTAGCCAGACTAATGGATCATGGGACAGAATCTAAAACAACTGGTTTAGCAGGAACAATCGGGTATTTGCCTCCTGAAGCAACCACAAGAGGCAAGGCTAGTAGGGAATCTGATGTATTCAGTTTTGGAGTAGTGGCTTTGGAGATAGCATGTGGTAGAAAAGCAATTGAATCTAATATGAAGGAAGAAGAGATATATTTGGTGGATTGGGTTTGGAAACTCCATGGCATGGGTGATGTGCTTAAAGCTTCTGATCCAAGCTTATATGGACACTTTGATGAGAAGGAAATGGAGATTTTAGTGAAAGTTGGGCTTTGGTGCACTCACACAGATTACCTTCTGAGGCCTACCATGAGGCAAGCAGTTCAAGTGCTTAGTTTTGAAGTGGCAGTGCCTACACTGACGCCACGGGTGCCATTCTTTGCCAATAACACATCATTCAGCTCTATGGACTCTATCACTCCTGCTTTTGCAAATAACCAACCTCTCTCTTCACAGTCCGCCACAACTCTTGAACTCGGTTCTCCCGGAGCTGCACATTTGCATACTTACTAA	2040	0.4275	MEARMNSPAMAASQYCKNIYVRVSFHVTLTLLLFVIHHAASLEFNYQQLGDHGDFFNTSGDVKPQEGVLKLTNNETFSYGRVIYHKLLNLWDKNSGKVTDFTTRFSFRINAANQTLADGIAFFLAHPNLPESQRDGAGFGLASRDQLSTLNYPKDFPFVAVEFDTYVNGWDPNYPHVGIDVNLIASSDTAQWFTGLDERGYDADISFDSSSNKLSVTFSGYKDGVVVKGNLSSVVNLKDVLPEWVEFGFSAATGIYFNEYALSSWSFNSSLDTEPQKGGSKRRLVIGLSLGLGAAILIVIVGVTFLVRWMLRTTGMEDTSLFDHAMDHDFEKVSLPKRFSYEELATATNNFATENKIGQGGFGAVYMGFMRELNTYVAIKKVSRGSRQGVKEYMSEVKIFGQLRHKNLVQLFGWCHQHEDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFNTKLGDFGLARLMDHGTESKTTGLAGTIGYLPPEATTRGKASRESDVFSFGVVALEIACGRKAIESNMKEEEIYLVDWVWKLHGMGDVLKASDPSLYGHFDEKEMEILVKVGLWCTHTDYLLRPTMRQAVQVLSFEVAVPTLTPRVPFFANNTSFSSMDSITPAFANNQPLSSQSATTLELGSPGAAHLHTY	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01675	679	FunFam	Lectin-domain containing receptor kinase A4.3	428	639	-	-
	Viun3g01675	679	ProSitePatterns	Legume lectins alpha-chain signature.	241	250	IPR000985	-
	Viun3g01675	679	Pfam	Legume lectin domain	41	278	IPR001220	GO:0030246
	Viun3g01675	679	ProSitePatterns	Protein kinases ATP-binding region signature.	357	381	IPR017441	GO:0005524
	Viun3g01675	679	CDD	STKc_IRAK	357	620	-	-
	Viun3g01675	679	Gene3D	-	40	284	-	-
	Viun3g01675	679	Gene3D	Transferase(Phosphotransferase) domain 1	428	636	-	-
	Viun3g01675	679	SUPERFAMILY	Concanavalin A-like lectins/glucanases	40	272	IPR013320	-
	Viun3g01675	679	CDD	lectin_legume_LecRK_Arcelin_ConA	42	271	IPR001220	GO:0030246
	Viun3g01675	679	SUPERFAMILY	Protein kinase-like (PK-like)	335	646	IPR011009	-
	Viun3g01675	679	Gene3D	Phosphorylase Kinase; domain 1	336	427	-	-
	Viun3g01675	679	FunFam	L-type lectin-domain containing receptor kinase IX.1	336	427	-	-
	Viun3g01675	679	ProSiteProfiles	Protein kinase domain profile.	351	636	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01675	679	PANTHER	-	61	623	-	-
	Viun3g01675	679	ProSitePatterns	Legume lectins beta-chain signature.	159	165	IPR019825	-
	Viun3g01675	679	Pfam	Protein kinase domain	352	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01675	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Viun3g01675	679	SMART	serkin_6	351	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01675	Viun-Chr3	11624169	11626386	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g01675	30	634	Receptor kinase-like Gene Family	AT5G10530	44.197	2.76e-162	479

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun3g01675		Pkinase	2.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01675	-		-	var:108318726	1041.95