Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01673 ATGGCTGCTTCTGGATTACTATTTAGGATCATCATTTTGGTCATCATCCTAATCATCATCCCCATTGCAATAACAAAGGCTCAAACTCAGTCTTTCGAGTGTCCCAGATTCAGTTCAACTTGTATAAAACACCTTAAACTAGAAGGGAGTGCTTCTACCACAGGTTCTGCTATCCAACTCACAGAAGATAACGCAATGGACCTAAGCACGTCGTTTGGGAGCGCAGGGCGAGTCACGTATGCTGAACGAATAAACCTTAGGGACAAGAATTCAAATGAACAAAGAGACTTCATTACCAACTTTTCCTTTGTTGTTTCCTCATCAAATCAGAGTATTTATGGAGGTGGTTTGGTATTCTTCCTTGCAAGCCGAAATCTTCCATCCACAGATAGGGTAGGAGGAAGTTTTGGCGTTGGCCTTACGGATGGTTATCTTGAGCTTTTCCAGTTAGGTTATCGATTCCTGGGAGTGGAGTTTGTCACTTTCAGAAACCCATTTCACCAACCTGATGCTGAAGTAGCCATAAATATCATTAACATGAAGTCTAGAATAAATGAGAGATGGCGGATACATATTGCACAGGGCAAAGTTTGTAACTGTAGTATTGTATACGATTCTAGGAACAGTATTTTGAATGTCTCTTACACTGGATACAAAATCAGGGATGGGAAAGTGAAAAAGACTACACAGTATCTTTCATACTCTGTTGATATAAGGCAGGAATTACCAGACTCGGTTGTTGTTGGCATATCAGCTGCAACTGGAGTATTTTCTGAGCAGCATAAGTTGCTCTCATGGTCGTTTAGCACAACCCCACCAAGTGATGATGAAGAGAAGGAAATCAAGGCTGTCATCATAACATTGGAGGGAATAGGAATTGGTGCTGTCTTGTTTTTGAGCTTGTTCGGAATGGTTATGATTTCATTGAGGATGATGGCCAAGAGAAAGGAAGTAGGTCACACTTCAGATCCAAAGAGGGGTGATGAATTAGAAATGAGCACTGGACCTAAGAAGATTAGATATCATGAATTGGCAACTGCAACCAACAACTTTGATGAGACGAATAAGCTTGGGCAAGGAGGGTTTGGTGGTGTTTATAAAGGCTATTTCAAAGACTCCAACACCTATGCTGCTATAAAGAGGATATCAGCAGATTCTAAGCAGGGTGTAAAACAATACATTGCAGAAGTGACGATCATTAGCCAACTGAGGCATAAGAATTTGGTGAAACTCACTAGTTGGTGCCACAAGAAGAATGATTTTCTCTTGATATACGAGTACATGGAAAACGGGAGCTTAGACTCTCATCTTTTTCGGGGAGAGAGTATATTGGCGTGGCAAGTGAGGTACAACATAGCCTTGGGATTAGCCTCAGCATTGCTTTACCTACAAGAAGAATGGGAGAAATGTGTGCTTCATAGGGACATAAAATCAAGCAACGTAATGTTGGACTCCAACTTCAATCCCAAGCTTGGTGACTTTGGCCTGGCTAGGTTGGTGGATCATGATAAAGGGTCAGAAACCACAGACGTGGCTGGGACCATGGGTTACTTGGCTCCTGAATACATGAACACAGGCCAGGCTCGAAAGGAGTCTGATATATTCAGTTTTGGGGTTGTTTTGCTGGAGATAGCCACTGGAAAAAAAGCCATTCACCACAAACACATGGAGGGTGAGGTATCAGTGGTTGAATGGGTGTGGAAGCTCTACGAATTGAGAAATGTGATTGCAGCAGCAGATGAAAACCTAGGTGGGGAATTTGATGTTCAGCAAATGGAATGCTTACTGGTAGTTGGTCTTTGGTGTGCTAATCCAGATTCAGCATCCAGGCCTGTAATAAGACAAGTGATTAACGTTCTTAACTCTGAATCTTCTTTACCAATTCTTCCACAGCAGATCCCAGTACAAGGTTGTTCATGA 1920 0.4219 MAASGLLFRIIILVIILIIIPIAITKAQTQSFECPRFSSTCIKHLKLEGSASTTGSAIQLTEDNAMDLSTSFGSAGRVTYAERINLRDKNSNEQRDFITNFSFVVSSSNQSIYGGGLVFFLASRNLPSTDRVGGSFGVGLTDGYLELFQLGYRFLGVEFVTFRNPFHQPDAEVAINIINMKSRINERWRIHIAQGKVCNCSIVYDSRNSILNVSYTGYKIRDGKVKKTTQYLSYSVDIRQELPDSVVVGISAATGVFSEQHKLLSWSFSTTPPSDDEEKEIKAVIITLEGIGIGAVLFLSLFGMVMISLRMMAKRKEVGHTSDPKRGDELEMSTGPKKIRYHELATATNNFDETNKLGQGGFGGVYKGYFKDSNTYAAIKRISADSKQGVKQYIAEVTIISQLRHKNLVKLTSWCHKKNDFLLIYEYMENGSLDSHLFRGESILAWQVRYNIALGLASALLYLQEEWEKCVLHRDIKSSNVMLDSNFNPKLGDFGLARLVDHDKGSETTDVAGTMGYLAPEYMNTGQARKESDIFSFGVVLLEIATGKKAIHHKHMEGEVSVVEWVWKLYELRNVIAAADENLGGEFDVQQMECLLVVGLWCANPDSASRPVIRQVINVLNSESSLPILPQQIPVQGCS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01673 639 Pfam Legume lectin domain 30 279 IPR001220 GO:0030246
Viun3g01673 639 Gene3D Phosphorylase Kinase; domain 1 336 427 - -
Viun3g01673 639 SMART serkin_6 351 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01673 639 FunFam L-type lectin-domain containing receptor kinase IX.1 336 427 - -
Viun3g01673 639 Gene3D - 27 289 - -
Viun3g01673 639 FunFam Lectin-domain containing receptor kinase A4.3 428 638 - -
Viun3g01673 639 SUPERFAMILY Protein kinase-like (PK-like) 334 628 IPR011009 -
Viun3g01673 639 PANTHER - 59 623 - -
Viun3g01673 639 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 276 IPR013320 -
Viun3g01673 639 Gene3D Transferase(Phosphotransferase) domain 1 428 637 - -
Viun3g01673 639 CDD lectin_legume_LecRK_Arcelin_ConA 31 271 IPR001220 GO:0030246
Viun3g01673 639 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01673 639 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Viun3g01673 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Viun3g01673 639 CDD STKc_IRAK 357 621 - -
Viun3g01673 639 Pfam Protein kinase domain 352 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01673 Viun-Chr3 11607612 11609531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01673 11 635 Receptor kinase-like Gene Family AT5G10530 42.702 2.17e-160 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun3g01673 Pkinase 8.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01673 - - vum:124829843 1010.75