LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01672	ATGGCTTGGTGGCATAACACTGTTCATAATCCAATTCTTTTCTGTCATGCAATGAGAACAATTTTCATCCTCCAAATACTCCCTCTTGCAAACTCATTATCATTTGATTACCCCAACTTCAAGAATGGTGATGTAAAATGGGAAGGGGATGCTTCTATTCTGAAAGGAGCGATCCAAGTCACTTCCAACACCATAGACCAAAACAACAATTTCAGTGTTGGGAGAGTCACAAGTTTTGAACAGATGCTTCTCTGGGATATGAAGTCTAGAAAGCTTTCTGATTTCACTACTAAATTTTCCTTTGTTATCTTTTCAGAAAAGAGATACTATGGAGATGGAATGGCCTTTTTCCTTGCTGATCCTAATCTCCCACTTCTGAAGGACATTAAACAAGGAGGTGGTCTTGGACTTGTGGATGGTGAACAAGTTTTGAATTCAACTCAGCACCCATTTGTAGCAGTGGAGTTTGACACCTTCCACAACAAATTATGGGACCCTTCAGGTAGCACTCATGTAGGTCTGAATTTCAACTCTATGAAGTCCAACATAACTAGGTCATGGTTGACAGATATTCAAATTTGGAATGTTTATAATTGCAGCATTAAGTACAATTCAAGTACTCTAAATCTGAGCGTTTCATTCACAATGTACAATGATAGTAAACCAGTTGAAGAATACATTTCGTACAAGGTTGATTTGAGAGATCACTTACCAGGGAGGGTTATTCTTGGTTTTTCTGCCGCAACAGGGAAATTGTATGAGGTGCATACATTGAGATCATGGTCATTTAGTTCAAGTCTTCAAAGCGATGAAAAAACAGATGAGGTAAAACCAGAAGCAGTCCCACCAGATTCCAATCTTATCAGTTCAGAAAAAGGAAAGAAAATAGGATTGTGGGTAGGGCTTGGAATTGGTCTTGGCTTGGTTTTGAGTTTGTCTTTTACTATGTTGTGGAAGAGGAGTAGAGGTAGAAAAGAAGAGTTAGTTTTTGATCTCAGTATGGGTGATGAATTCCCAAAGGGCACCGGACCTAAGAGCTTCTCCTATAATGAGCTAGCAAGTGCTACAAACAAGTTTGCTGAGTCTGAGAAGTTGGGGCAAGGTGGTTTTGGTGCTGTCTATAAAGGTTATTTGAAAGACACAAAGTCCTATGTTGCTATCAAGAGAATATCAAGAGATTCCAAACAGGGAATGAAGGAGTATGTGACAGAAGTGAAGGTAATAAGTCAACTGAGACATAGGAATTTGGTACAACTCATTGGTTGGTGTCATGAGAAGAATGAGTTTGTCCTTGTATATGAGTTCATGCCAAATGGAAGCTTAGACTCTCACCTTTATGGAGTGAAAAGCTTCTTAACATGGAGAGTGAGGTATAATATAGCTTTGGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGAGACATTAAATCAAGCAACATTATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTGGCTAGGCTGGTGGACCATGAGAAAGGGTCACAAACGACACATATAGCAGGGACTAGGGGCTATATTGCACCAGAATATTTCAGTTCAGGAAAGGCTACTAAGGAATCTGATATATACAGCTTTGGGGTTGTGTTGTTGGAGATAGCTAGTGGAAGAAAATGTGTTGAACTAAAAGCTGAGGAGGGTGAAATAACTCTAGTTGAGTGGGTTTGGAAGCTCTATGGATTGGGGAGGTCACATGAAGCAGTTGATCCAAAGTTATGTGGAGAATTTGATGAGAAGCAAATGATACGTTTAGTGGTTGTTGGCCTTTGGTGTGTTCATCCAGATTTCTCATTCAGGCCTTCTATAAGGCAAGTGATTCAGGTCCTTAAATTTGATTCTCCTTTACCTCTTCTCCCAGAAATGATGCCTGTGCCAACATATCTTCCTCCAACAATAAAAGCACTTTTTTCTTCAGTTTCTTCTTTCTTTTGGGAAACAAGTTAG	2001	0.3968	MAWWHNTVHNPILFCHAMRTIFILQILPLANSLSFDYPNFKNGDVKWEGDASILKGAIQVTSNTIDQNNNFSVGRVTSFEQMLLWDMKSRKLSDFTTKFSFVIFSEKRYYGDGMAFFLADPNLPLLKDIKQGGGLGLVDGEQVLNSTQHPFVAVEFDTFHNKLWDPSGSTHVGLNFNSMKSNITRSWLTDIQIWNVYNCSIKYNSSTLNLSVSFTMYNDSKPVEEYISYKVDLRDHLPGRVILGFSAATGKLYEVHTLRSWSFSSSLQSDEKTDEVKPEAVPPDSNLISSEKGKKIGLWVGLGIGLGLVLSLSFTMLWKRSRGRKEELVFDLSMGDEFPKGTGPKSFSYNELASATNKFAESEKLGQGGFGAVYKGYLKDTKSYVAIKRISRDSKQGMKEYVTEVKVISQLRHRNLVQLIGWCHEKNEFVLVYEFMPNGSLDSHLYGVKSFLTWRVRYNIALGLASALLYLQEEWEQCVIHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTHIAGTRGYIAPEYFSSGKATKESDIYSFGVVLLEIASGRKCVELKAEEGEITLVEWVWKLYGLGRSHEAVDPKLCGEFDEKQMIRLVVVGLWCVHPDFSFRPSIRQVIQVLKFDSPLPLLPEMMPVPTYLPPTIKALFSSVSSFFWETS	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01672	666	FunFam	L-type lectin-domain containing receptor kinase IX.1	344	435	-	-
	Viun3g01672	666	ProSiteProfiles	Protein kinase domain profile.	359	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01672	666	SUPERFAMILY	Protein kinase-like (PK-like)	343	652	IPR011009	-
	Viun3g01672	666	FunFam	L-type lectin-domain containing receptor kinase IX.1	31	276	-	-
	Viun3g01672	666	CDD	STKc_IRAK	365	629	-	-
	Viun3g01672	666	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	273	IPR013320	-
	Viun3g01672	666	FunFam	Lectin-domain containing receptor kinase A4.3	436	648	-	-
	Viun3g01672	666	Pfam	Protein kinase domain	360	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01672	666	PANTHER	-	59	630	-	-
	Viun3g01672	666	ProSitePatterns	Protein kinases ATP-binding region signature.	365	388	IPR017441	GO:0005524
	Viun3g01672	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	479	491	IPR008271	GO:0004672\|GO:0006468
	Viun3g01672	666	CDD	lectin_legume_LecRK_Arcelin_ConA	33	261	IPR001220	GO:0030246
	Viun3g01672	666	Pfam	Legume lectin domain	32	274	IPR001220	GO:0030246
	Viun3g01672	666	SMART	serkin_6	359	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g01672	666	ProSitePatterns	Legume lectins beta-chain signature.	152	158	IPR019825	-
	Viun3g01672	666	Gene3D	-	30	282	-	-
	Viun3g01672	666	Gene3D	Transferase(Phosphotransferase) domain 1	436	647	-	-
	Viun3g01672	666	Gene3D	Phosphorylase Kinase; domain 1	344	435	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01672	Viun-Chr3	11592120	11594120	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g01672	22	646	Receptor kinase-like Gene Family	AT5G10530	49.371	0.0	550

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun3g01672		Pkinase	3.6e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01672	-		-	gmx:100780181	1111.67