Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01666 ATGGGGAGAGGAAAAATTCCCATTCAAAAAATCGAAAATTTGACGAACCGGCAAGTAACTTTCTGTAAGAGAAGAAATGGGTTAGTGAAGAAAACTAGAGAACTGTCTATTCTCTGTGATGCAGAAGTTGGAGTCATTGTGTTTTCCTGCACGGGCAAACTTTATGAGTATTCAAACACCAGCATGAAATCAATCATTGATCGCTTTAACAGCCACAACGAGAACCTTGGTTGGCTAATGGATCCTACTTCATCTGTCAAGAGAGAAGCAGCAAGCTTAAGGGAACAACTACAACATTTGCAAGAAAGCAACAGGCAACTGATGGGTGAAGAACTTTCTGATTTGAATATGAATCAGCTAAAGGAACTGGAAAATAAACTCCAAACTGGTTTGAGTAATATTCAAATAAAAAAGGATCAAATGCTTAAAGATGAGATCAAAGAATTGCAAAAAAAGGGAATGGTCATTCATCAACAAAATGAAGAACTTCATAAGAAGATAAACCTTATCCATGAAAATAATGTAGAACTACGAAAGGTTATTGAAGCAAGGGATATGGAAAAAGAAAAGGCCACATGCTATCAGCAATGGATATGA 597 0.3652 MGRGKIPIQKIENLTNRQVTFCKRRNGLVKKTRELSILCDAEVGVIVFSCTGKLYEYSNTSMKSIIDRFNSHNENLGWLMDPTSSVKREAASLREQLQHLQESNRQLMGEELSDLNMNQLKELENKLQTGLSNIQIKKDQMLKDEIKELQKKGMVIHQQNEELHKKINLIHENNVELRKVIEARDMEKEKATCYQQWI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01666 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun3g01666 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Viun3g01666 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun3g01666 198 Coils Coil 120 140 - -
Viun3g01666 198 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Viun3g01666 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun3g01666 198 Coils Coil 83 110 - -
Viun3g01666 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun3g01666 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun3g01666 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun3g01666 198 Pfam K-box region 85 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g01666 198 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun3g01666 198 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun3g01666 198 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Viun3g01666 198 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01666 Viun-Chr3 11528347 11547633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01666 1 185 MADS-box Gene Family AT4G37940 50.000 1.96e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun3g01666 K-box 3.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01666 K09264 - gmx:100779119 275.404