Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01648 ATGGAGATCTCATCCATCAGAGAATTACCTGATATGAAGGAGCAGGAAATAATGGAGGACCCTAATTTTCTCCGTCAGTGGCACCTGAGTTCTATTGAGGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTTCAACATCATGCATTTACATATCCAGACTTCAATCCCAAAGCTTCCATGGAAACTACACTTATGGACATTGAAAGACCAACAAAACATCATAGAAACATCAGCTGGAATCCTATCAAAGGTTCTGCTCAGACATCAGATACACAATTTGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACATAAGTCCACTGGGATTAGTGAAGGCCAATGAGATGGCTTGTCCTATAACCAATAATAGCACAACTTCTCTGGACACTTTTTCTCAAGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGATTGGAAGACGCTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGAGGTTCATTGCTTTATCTGCACTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCTACTTGAAGCAATTGCAAGAGAAAGTAAAGGCTCTTGAGGAAGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTGATTGTGAGGAAATCTCAACTGTCCAATGATGTTAACAATTCTTCGGAATATGTTGGTCCGTTATTTGACGAAACAGTTCCCGAAATTGAAGCAAGATTTTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGTGTGGTGGAAAAAACAATCCATGAAATTGAGAACCTCCATCTGAAGGTCACCAACAGCAATGCCATGGCATTTGGGAGATGTGCCATTGATATGACAATCATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTGCGATCAGCTTTTACATCTTTCATGTGA 1038 0.4066 MEISSIRELPDMKEQEIMEDPNFLRQWHLSSIEDPNLLPIAAAFGETFQHHAFTYPDFNPKASMETTLMDIERPTKHHRNISWNPIKGSAQTSDTQFVSFPNLLSFMDSNHISPLGLVKANEMACPITNNSTTSLDTFSQGILGNHNYLFKACQETKKIGRRSKISHPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAISYLKQLQEKVKALEEAQNMKKTVESVVIVRKSQLSNDVNNSSEYVGPLFDETVPEIEARFCERNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAIDMTIIAQMDMEFCMGVKDVVRNLRSAFTSFM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01648 345 CDD bHLH_AtNAI1_like 166 241 - -
Viun3g01648 345 PANTHER BHLH TRANSCRIPTION FACTOR 45 343 - -
Viun3g01648 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Viun3g01648 345 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Viun3g01648 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 232 IPR036638 GO:0046983
Viun3g01648 345 Coils Coil 205 235 - -
Viun3g01648 345 SMART finulus 172 221 IPR011598 GO:0046983
Viun3g01648 345 Gene3D - 162 239 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01648 Viun-Chr3 11388262 11391257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01648 166 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.552 1.33e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g01648 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01648 - - vun:114179595 689.493