Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01647 ATGAGTAAGTTTTTTATCTTCAACAATGTACATGTACATGTACCAAAGAATCATGGAGTGTTTATGATTCTTACTTCTTGCTCTTTTGATTGCAGAATTGGCTTTCTTATGGAGATCTCATCCATCAGAGAATTACCTGATATGAAGGAGCAGGAAATAATGGAGGACCCTAATTTTCTCCGTCAGTGGCACCTGAGTTCTATTGAGGACCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTTCAACATCATGCATTTACATATCCAGACTTCAATCCCAAAGCTTCCATGGAAACTACACTTATGGACATTGAAAGACCAACAAAACATCATAGAAACATCAGCTGGAATCCTATCAAAGGTTCTGCTCAGACATCAGATACACAATTTGTATCTTTCCCAAATCTTCTTTCGTTTATGGATTCCAATCACATAAGTCCACTGGGATTAGTGAAGGCCAATGAGATGGCTTGTCCTATAACCAATAATAGCACAACTTCTCTGGACACTTTTTCTCAAGGAATCTTGGGGAATCATAACTATCTCTTTAAGGCATGCCAAGAGACCAAAAAGATTGGAAGACGCTCAAAAATTTCTCATCCTCAAGACCACATCATAGCTGAAAGAAAGCGAAGAGAGAAGCTCAGCCAGAGGTTCATTGCTTTATCTGCACTTGTTCCTGGACTACAGAAGACGGACAAAGCTTCTATTCTTGGAGATGCTATCAGCTACTTGAAGCAATTGCAAGAGAAAGTAAAGGCTCTTGAGGAAGCACAAAACATGAAGAAAACTGTGGAGTCTGTGGTGATTGTGAGGAAATCTCAACTGTCCAATGATGTTAACAATTCTTCGGAATATGTTGGTCCGTTATTTGACGAAACAGTTCCCGAAATTGAAGCAAGATTTTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGACCAAAGGTGTGGTGGAAAAAACAATCCATGAAATTGAGAACCTCCATCTGAAGGTCACCAACAGCAATGCCATGGCATTTGGGAGATGTGCCATTGATATGACAATCATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGAAGGATGTAGTGAGAAATCTGCGATCAGCTTTTACATCTTTCATGTGA 1146 0.3979 MSKFFIFNNVHVHVPKNHGVFMILTSCSFDCRIGFLMEISSIRELPDMKEQEIMEDPNFLRQWHLSSIEDPNLLPIAAAFGETFQHHAFTYPDFNPKASMETTLMDIERPTKHHRNISWNPIKGSAQTSDTQFVSFPNLLSFMDSNHISPLGLVKANEMACPITNNSTTSLDTFSQGILGNHNYLFKACQETKKIGRRSKISHPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASILGDAISYLKQLQEKVKALEEAQNMKKTVESVVIVRKSQLSNDVNNSSEYVGPLFDETVPEIEARFCERNVLIRVHCEKTKGVVEKTIHEIENLHLKVTNSNAMAFGRCAIDMTIIAQMDMEFCMGVKDVVRNLRSAFTSFM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01647 381 CDD bHLH_AtNAI1_like 202 277 - -
Viun3g01647 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Viun3g01647 381 SMART finulus 208 257 IPR011598 GO:0046983
Viun3g01647 381 Pfam Helix-loop-helix DNA-binding domain 206 252 IPR011598 GO:0046983
Viun3g01647 381 Gene3D - 198 275 IPR036638 GO:0046983
Viun3g01647 381 PANTHER BHLH TRANSCRIPTION FACTOR 81 379 - -
Viun3g01647 381 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Viun3g01647 381 Coils Coil 241 271 - -
Viun3g01647 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 268 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01647 Viun-Chr3 11388262 11391258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01647 202 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.552 4.01e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g01647 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01647 - - vun:114179595 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01647 3 11388262 11391258 Viun3g01647 3 11388262 11391258 ECH
Viun3g01647 3 11388262 11391258 Viun6g02965 6 32588127 32590813 PCT