Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01624 ATGGTTTTCAGCGTTCTTCTACTCATGTTGTGGTCATTGCAATTGCAGACTTGCTTCACCATGAGTAACGCAGGTAGCAGTGAACTCAACGGAGGATCATTGTTTGATCCATCATTTTGGTACAGTTTTACCATTGGTTATGTTTGTTCAGCCACCGGGATCATCTTTGCTTTTATGTGCTTCTGTGTCCCTTGGCCGCAACTAAAGAAGGCCAAAAGAAAGTTCATGTCTTCCAGTGTTCGTAGCCGTAATATACATGCAATAAAGGCAAACCAAGTTCCCAAACTACTACTCTGTATGTTGTTGCTGAAGAAAGGAAACCAAGAGGTTTCAAGAGTACTGAACAAACTAATATCGAGTATCAGCTTCATGGAACTATGCAAAGCAACGGATTACTTCAACATGACCAATGTTATTGGGACGGGAAGGACAGGGATGGTGTACAAGGCCACGCTTTCTAATGGCTCAAAAGTGGCAGTGAAGAGACTCTATGATTCTAATTTATTTGAAACAAAGTTTGCCTTAGAAATCGTGATTCTACAGAGATTCAAACATAAAAACTTGGTGGATCTTCTTGAGTTTTGCACAGAGAGAAAGCAGAGGATCCTTGTGTATGAATTCATGCCAAATGGTAAACTCTCTGATTGGCTACATCCTTTACAAAACGAAGCTTTTCCATTGGATTGGCCAATAAGGCTTAAAATAGCACTTGGGTTGGCTAGAGGTTTATGCTTTCTCCATCATTGTTGCAATTGGAAGATACTCCATTTTGGTATAAGCTCGGAGCATGTTTTGCTTGATAAGAATTTTGAGCCCAAATTATGGAATTTCAGAAGTGCTGAACTCATGAAAGAAAACCAGAAGAAGCTAGGGAAGAAGGATGTGTACGATTTTGGCATTGTTCTGATGGAGCTGATCACTGGAAAGAAGCACATTGAAACGAATGGAAATTTTAATGTGATTGATTCATATGTATCAGGAAAAGGATTCGATGAGCAAATCTCTTGTCTGGTTAAGGTTGCAGTTGACTGCATTCAGTTTTCTCCACACCAGAGGCCAAGTATGGTTGATGTGTATAAATATATAGAAAGGTTGTGGGAAGGCTACGAAACTGATGACTGA 1122 0.3993 MVFSVLLLMLWSLQLQTCFTMSNAGSSELNGGSLFDPSFWYSFTIGYVCSATGIIFAFMCFCVPWPQLKKAKRKFMSSSVRSRNIHAIKANQVPKLLLCMLLLKKGNQEVSRVLNKLISSISFMELCKATDYFNMTNVIGTGRTGMVYKATLSNGSKVAVKRLYDSNLFETKFALEIVILQRFKHKNLVDLLEFCTERKQRILVYEFMPNGKLSDWLHPLQNEAFPLDWPIRLKIALGLARGLCFLHHCCNWKILHFGISSEHVLLDKNFEPKLWNFRSAELMKENQKKLGKKDVYDFGIVLMELITGKKHIETNGNFNVIDSYVSGKGFDEQISCLVKVAVDCIQFSPHQRPSMVDVYKYIERLWEGYETDD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01624 373 ProSiteProfiles Protein kinase domain profile. 133 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01624 373 Pfam Protein kinase domain 135 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01624 373 ProSitePatterns Protein kinases ATP-binding region signature. 139 161 IPR017441 GO:0005524
Viun3g01624 373 Gene3D Transferase(Phosphotransferase) domain 1 292 372 - -
Viun3g01624 373 Gene3D Phosphorylase Kinase; domain 1 99 207 - -
Viun3g01624 373 SUPERFAMILY Protein kinase-like (PK-like) 112 362 IPR011009 -
Viun3g01624 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 71 364 - -
Viun3g01624 373 Gene3D Transferase(Phosphotransferase) domain 1 208 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01624 Viun-Chr3 11235195 11236654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01624 122 363 Receptor kinase-like Gene Family AT1G60800 35.192 6.58e-46 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun3g01624 Pkinase 3.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01624 - - vra:106766350 635.18