Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01616 ATGACCAGACCTACCTTGATTTTCATAATAGGAATTTGTATAGGCTTTGTGGTTGGGATTGGTTTGACATTATCCATAGTACACTGCCTCGTAAGGAGAAGGAAGCCCACAGAGGTTGATAAGAGCATTTCTCACAAAGCAGTGACAATTCCTGTTAATGTCAAAGGGTATGGTTCTAACTCAACATTATCAGAGGGCGAGGAGTCACCCAGAACATCTGAGTGGAGTAACATGCCTTTATGGTTGGAAAATCTTAGGAGAAGCAGTGCAGTGTCAGCTTGTGGAATTCCCAAGTATTCTTACAAAGATATACAAAGGGCTACTTCTAATTTCACCACCATCATTGGCAACGGAGCCTTTGGTCCTGTTTATAAAGCGCAGATGGCTACGGGTGAGACAGTTGCAGTTAAAGTCTTAGGTACTAATTCAAGACAAGGAGAGCAGGAATTTTTAACTGAGGTTTTATTACTTGGAAGATTACATCACAGAAACCTTGTGGATTTGGTGGGATATGTGGCTGACAAAGGAAAACATATGCTTCTTTACACTTACATGAGCAATGGCAGCCTTGCTTCCCATTTGTATGATTTCGGAAAAAATCGTGAGCCACTGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTCTATGAAGGCCAAGGTCACTGACTTTGGGCTTTCCAGACCTGAGATGATCATACCTCGCACATCAAATATCCGTGGAACATTCGGATATCTTGATCCTGAGTATTTGTCTACAAAAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTATTTGAGCTCATCACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGAAGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATTTGCATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAATGAAGTCTCCCAAAGCCGACCACCGATGTGTGAAATTGTTCAAGCATTATCAGAGCTATGTAAGAGGAATAGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTACATCAACTGCGAGTACAAATATATTGGGCAGATTGCATAGCCGATGA 1275 0.4173 MTRPTLIFIIGICIGFVVGIGLTLSIVHCLVRRRKPTEVDKSISHKAVTIPVNVKGYGSNSTLSEGEESPRTSEWSNMPLWLENLRRSSAVSACGIPKYSYKDIQRATSNFTTIIGNGAFGPVYKAQMATGETVAVKVLGTNSRQGEQEFLTEVLLLGRLHHRNLVDLVGYVADKGKHMLLYTYMSNGSLASHLYDFGKNREPLNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQSMKAKVTDFGLSRPEMIIPRTSNIRGTFGYLDPEYLSTKTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGEGKVGWEEIVDGQLNGKYDLHNLNDMASLAFICVNEVSQSRPPMCEIVQALSELCKRNSKNLGRTSSAAALKDVCIEVDQIETKDFTSTASTNILGRLHSR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01616 424 SUPERFAMILY Protein kinase-like (PK-like) 87 374 IPR011009 -
Viun3g01616 424 Pfam Protein tyrosine and serine/threonine kinase 111 373 IPR001245 GO:0004672|GO:0006468
Viun3g01616 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Viun3g01616 424 CDD STKc_IRAK 115 377 - -
Viun3g01616 424 PANTHER OS01G0750732 PROTEIN 15 389 - -
Viun3g01616 424 ProSiteProfiles Protein kinase domain profile. 109 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01616 424 Coils Coil 423 424 - -
Viun3g01616 424 FunFam calcium/calmodulin-regulated receptor-like kinase 1 185 395 - -
Viun3g01616 424 Gene3D Phosphorylase Kinase; domain 1 81 184 - -
Viun3g01616 424 SMART serkin_6 109 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01616 424 Gene3D Transferase(Phosphotransferase) domain 1 185 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01616 Viun-Chr3 11055862 11060792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01616 32 374 Glycoside Hydrolase AT3G07070 38.655 2.47e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Viun3g01616 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01616 - - gmx:100816549 673.315