Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01603 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTGGTGGAGTAGTACTATTGATTCAGCAAGAAGTGTATTCCCAGTAACCTCATCATCGATTGCTTCTTCTCCTTGTTCCGTGGCAGCTCATAATGATGCAGGAATCTACAGCACTCGCCAAACAGATTTGAAGGCTACCAAGTGTTGTGTTGAAGAGACTAACAATTTACTTTCTAACACTACTTACCTGGGTTTTTCTGATGCACACAAGCCACCCAAGAGTGAATCAGCCAGTGGAAGCAGTGGAAGTGGTAGCTTGTTGATCGATTCTACCATACAGATGATGGGTTTTGGCCTCACATCTTCAACATCAGAGAATTGGAATCAACCTCTATTAGTTCGATGTAATAATGGAAGGCCAGAGAGCAATTTTGATTCCGTGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCGCAGGGATTGGACTCCGAAGAGCTTCTCCTCTGCTGGTGGAGGAGACCAACAAATTGATAATTTCAAACCATTGAACCAAGAATTTTCAGTAGATTACCAGAGTCTAAGTTCTTTAACCAGCAATGGGTTGTCATCAAATCGTGATTTTGCAATTGGATCAGCCTCCTATGGTAACCCTTCAACGTTACAAAGCTTATATGAACCTGATCCTCACCCACAATTACCACAGCACTCACTTTTCACCAACCGTTCAATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTAGCACCAACATGGTCTAAAGTCTCTACTTTTTTGAAGCCCACAACAACAGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCACTTTCTGGAATGCTTCCGCCGACGCACTTAACGACATAAGAGCAGGTACCTTTACTTCATCGCAATCACAATATCAAACACCAACCTTCGATCCAGAGAAACACAATTTCCCAAGTACTCCATTAAACAAGCTCAACAGTGAAGAAACTATAGATTCAGCAACAATGGCGAGGAAAGATGCTTGTGAACCAGCATTAAAGAGGCCAAGGATTGAAACTCCGTCCCCATTACCGACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACCTCATATATGAAAAACGGAGCTCCCATCCAAGTGCAGCAGGAGTGTGATGATCTGAAAGAGTCAGAAGGAGCACATGAAGATTTAAAAAGCCGAGGTCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTTGCAACAGAAAGCAGTAGCAGTGGTGAATTGTGGACGCCTACATTCAGGGGCGCTCTGTTGAGATAG 1440 0.4361 MAEEFQARICGENWWSSTIDSARSVFPVTSSSIASSPCSVAAHNDAGIYSTRQTDLKATKCCVEETNNLLSNTTYLGFSDAHKPPKSESASGSSGSGSLLIDSTIQMMGFGLTSSTSENWNQPLLVRCNNGRPESNFDSVLQEETGIDSSNSQIRRDWTPKSFSSAGGGDQQIDNFKPLNQEFSVDYQSLSSLTSNGLSSNRDFAIGSASYGNPSTLQSLYEPDPHPQLPQHSLFTNRSMSYSSKASYGTPCTELAPTWSKVSTFLKPTTTAKQHPIGLHFSNNTTFWNASADALNDIRAGTFTSSQSQYQTPTFDPEKHNFPSTPLNKLNSEETIDSATMARKDACEPALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQVQQECDDLKESEGAHEDLKSRGLCLVPISSTFPVATESSSSGELWTPTFRGALLR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01603 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 405 IPR011598 GO:0046983
Viun3g01603 479 CDD bHLH_AtbHLH_like 362 413 IPR045239 -
Viun3g01603 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 421 IPR036638 GO:0046983
Viun3g01603 479 FunFam Transcription factor bHLH123 family 366 428 - -
Viun3g01603 479 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 181 457 - -
Viun3g01603 479 Gene3D - 366 432 IPR036638 GO:0046983
Viun3g01603 479 MobiDBLite consensus disorder prediction 146 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01603 Viun-Chr3 10919044 10921940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01603 281 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 51.220 6.22e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01603 - - gmx:100784084 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01603 3 10919044 10921940 Viun6g02926 6 32396624 32399852 PCT