Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01601 ATGGCGACTCATCATCTTCCCGACCACTTCAAGTGTCCAATTTCCCTAGAAATAATGTCGGACCCTGTAATCCTGTCTTCGGGTCACACCTTCGACCGTTCCTCAATCCAACGTTGGCTAGACGCAGGCTACAGAACATGTCCAATTACCAAGTTGCCCCTCCCCGACCAACCTTCCCTCATTCCCAACCACGCGCTCCGAAGCTTAATCTCCAACTACACCCTCCTACCTCCTCTCCACCAAACCATTTCCCAACCTCAAACCCTAATTTCCACCCTCACCTCTCCAGCTTCTTCCTCCGATTCCAAAATCGATTCCCTCCGCCACCTCACGCGCCTCTCCAAGCGTGACTCCGCCTTCCGCCGCCACCTCGCGGACTCAGCCGCCGTCCCCGCCGTCCTCGCCGCCGTCGTCGACCCTGCTCTCCAGGAGACGGCGCTCCCGCTTCTGCTCAACCTCACCCTCGACGACGACTCCAAGGTCGGCCTCGTCGCCGAGGGCGTCGTCGCGCGCCTCGTCGCCGTTCTACTCAACGCGCCGCCTGACTGCCGTGCCGTCGCGGCCACCATCGTCACCAGCCTCTCCGTCGTCGAGGTCAACAAGGCCACCATCGGCGCTTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATAATCCGTGACGGAAAAGGAAGGGAGAGGAAGGAGGCCGCCACCGCGCTTTACGCGCTCTGCTCCTTTCCGGATAACCGGAGAAGAGCCGTGAGTTGCGGCGCTGTGCCGATTCTGTTGCGGAACGTAGAAATTGGATTGGAACGGTGCGTTGAGGTAATTGGCGTTCTGGCGAAGTGTAAGGAAGGGAGGGAGCAAATGGAAGGTTATAACGGTTGTGTTCAGATTCTGGCTAGCGTTTTGAGGAACGGAAGCTCCAGGGGGATTCAGTATGCGCTTTTCGCACTTACTTCACTTTGCTTGTACAGTCAGGAAATGGTGCTGTTAGCTCTTGAAGAAGGTGTTCTGGAAGCTTCTATTGTGTTCGTGGAAGATGATAATGAGAAGGTAAGGAGGAATGCGTGTAATTTGATTCGGGCTCTCCGTGGCAACAACAGCAACCACGATCGGGTGGAGTGA 1107 0.5727 MATHHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGYRTCPITKLPLPDQPSLIPNHALRSLISNYTLLPPLHQTISQPQTLISTLTSPASSSDSKIDSLRHLTRLSKRDSAFRRHLADSAAVPAVLAAVVDPALQETALPLLLNLTLDDDSKVGLVAEGVVARLVAVLLNAPPDCRAVAATIVTSLSVVEVNKATIGAFPAAIAALVAIIRDGKGRERKEAATALYALCSFPDNRRRAVSCGAVPILLRNVEIGLERCVEVIGVLAKCKEGREQMEGYNGCVQILASVLRNGSSRGIQYALFALTSLCLYSQEMVLLALEEGVLEASIVFVEDDNEKVRRNACNLIRALRGNNSNHDRVE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01601 368 SUPERFAMILY RING/U-box 5 74 - -
Viun3g01601 368 Gene3D - 87 368 IPR011989 -
Viun3g01601 368 FunFam RING-type E3 ubiquitin transferase 5 76 - -
Viun3g01601 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Viun3g01601 368 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Viun3g01601 368 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Viun3g01601 368 Pfam U-box domain 7 73 IPR003613 GO:0004842|GO:0016567
Viun3g01601 368 SUPERFAMILY ARM repeat 87 357 IPR016024 -
Viun3g01601 368 CDD RING-Ubox_PUB 7 57 IPR045210 -
Viun3g01601 368 FunFam RING-type E3 ubiquitin transferase 70 261 - -
Viun3g01601 368 PANTHER U BOX DOMAIN-CONTAINING 7 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01601 Viun-Chr3 10883442 10885173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01601 6 359 U-box Gene Family AT4G21350 58.356 6.57e-139 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01601 - - gmx:100785141 524.628