Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01599 ATGCACTATGCTAAGAGTCTTTCAAGCTTTGTCATGAGTCAATATCACAAGCATGGCATCTACCTGCTCTGTGCTAAGATTCTACTATTCAGCTTCTCCTTTTGCTCTTCTTCTGATACCATATTTGCTGACAAAGGCATCAGAGATGGAGAGCTTCTTGTTTCAAAAGCGCAAAAATTCGCTCTTGGATTCTTCAGTCCAGCGAAGTCCAACTTCCGCTATGTGGGAATATGGTACAACAATGTGCAGGAACAAACTGTTGCTTGGGTTGCAAACAGAAACTCTCCAATCAATGACACTTCTGGGTTTCTCTCAATCAACCCAGATGGAAACCTAGTACTCCAACACAAATATAGCACCTTTCCAGTTTGGTCTACCAATATTTCAACTTCCCAATCAAACACCACCAAAGTCATGGCTAAACTTACAGATATAGGTAACCTTGTTCTCATTCTTGACAACACCGAAGCTGTAATCTGGCAAAGCTTTGATCATCCCACAGATACCTTGCTACAGTATCTAAGAGTTGGTTTCGACAGAAGAACAAACCAGAGTTGGTTCCTCCAATCTTGGAAGACGGATGATGATCCCGGAGCAGGTTCTTACACATTGAAAATAAGCAGCGCTGGGAAACCCCAGATGATCTTTTACCACCAGAATCTTCCCTTTTGGCGAGGTGGATCGTGGAACGGTGAATTATTTATGGGTATACCTGATATGAAGAGAGATATGTATACTTTTAACGTTTCTTATATAGAAGATGATAACCAGGCAGTGCTCTCATATAGCATGGTTGATCAGTCCGTGATCTCTAGAGTAGTAGTTCAACCATCAGGTTTCTTTCAAGTATTCACTTGGGATGACCAAAAGAGTCAATGGAATAGGTACTGGTCTGAACCAACAAATCAGTGTGATAACTATGGAACCTGTGGATCAAACGGTAACTGTGACCCTTTGAACTTTGAGGAATTTCGGTGTACTTGTCTACCTGGTTTTGAACCCAAATCCCCACATGAGTGGTATGATAACAGAGATGGGTCAGAAGGGTGCGTGAGGAAGAAAGGTGTATCCGTTTGTGGGAATGGAGAAGGGTTTGTGAAACTTGAAGGCTTGAAGCTTCCTGATACCTCTGAGGCAACTGCCAAAGGTGGTTTGAGTTTGGATGAGTGTGAGGAGGATTGCTTGAGAAACTGCTCTTGCACTGCCTATGCAGTTCTTGATGTGAGGAATGGTGGTAGTGGGTGCTTGGCATGGCATGGAAATTTATTAGACATACAAAAACTGAGTGATCAAGGTCAAGATTTATTTGTCCGTGTTGATGCAGTTGAACTAGCAATTTATAACAAAAAAACAAAAGGAGTAAGCGGTAAACAGAGGATGGTTGCAATTCCAACCGCTTCAGTACTGACAAGTGTCATTCTTTTCTCCTGTGTATATTACATGTGGAAGAGAAAAAGAAAAGATAAAGTGATGCAACATTTAAACCAATTTTCCCCTGAAGACGTCCACGATATCCCAAGCAACACACATCCAAATCTTCCCTTTTTCAGCCTTAAAGTGATAATGGAAGCCACAAGAAATTTTGGTGATGAGAACAAGCTTGGGCAAGGTGGATTTGGTTCTGTCTATAAGGGCTGCCTAGCAAATGGACAAGAGATAGCAGTGAAAAGATTGTCGGAACATTCAGGTCAAGGGACAGAAGAGTTTAAAACTGAAGTTAGATTATTAGTTAAACTTCAACACAGAAATCTGGTGAGGTTACTCGGTTGTTGCTTTGAGAAAGAAGAAAGGATGTTAGTTTATGAATATTTACCAAATAAAAGCTTGGACTTCTTCATATTTGATGAAAAACGAAGGTCATCACTGACTTGGGATAAGCGGTTTGAAATCATTTTGGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATCCATAGAGATCTAAAAGCCAGCAATGTGCTACTTGATGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAGGACGAGAAGAGTGGTTGGAACATACGGTTATATGTCACCAGAATATGCAATGGATGGACGGTATTCAACAAAATCTGATGTGTTTAGTTTCGGGGTCTTACTCCTAGAGATCATTGCTGGCAAGAGAAATACAGATAGTGAAAGGGGAAGATCCTCCCCAAATTTAATTGGACATGTGTGGATGCTGTGGACAGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTGGCTCAGTCTTATTCTGCAGCTCTTGTTCTGAGGTGCATTCAGATTGGTTTATTGTGTGTGCAAGAAAATGCAGCGGATAGACCTTCCTTGTCAGAAGTTGTTTTTATGCTGGGCAATGAAACACCTCTTTCCCCACCCCAAAAGCCAGCATTTTTATTCAATGGAGACAGAGATTGGCCTGAGCCATCAACATCAGGGGGAGGATCTTCAATAAATGAAGTAACAGCAACTACCATCATCGCCCGCTAG 2535 0.4134 MHYAKSLSSFVMSQYHKHGIYLLCAKILLFSFSFCSSSDTIFADKGIRDGELLVSKAQKFALGFFSPAKSNFRYVGIWYNNVQEQTVAWVANRNSPINDTSGFLSINPDGNLVLQHKYSTFPVWSTNISTSQSNTTKVMAKLTDIGNLVLILDNTEAVIWQSFDHPTDTLLQYLRVGFDRRTNQSWFLQSWKTDDDPGAGSYTLKISSAGKPQMIFYHQNLPFWRGGSWNGELFMGIPDMKRDMYTFNVSYIEDDNQAVLSYSMVDQSVISRVVVQPSGFFQVFTWDDQKSQWNRYWSEPTNQCDNYGTCGSNGNCDPLNFEEFRCTCLPGFEPKSPHEWYDNRDGSEGCVRKKGVSVCGNGEGFVKLEGLKLPDTSEATAKGGLSLDECEEDCLRNCSCTAYAVLDVRNGGSGCLAWHGNLLDIQKLSDQGQDLFVRVDAVELAIYNKKTKGVSGKQRMVAIPTASVLTSVILFSCVYYMWKRKRKDKVMQHLNQFSPEDVHDIPSNTHPNLPFFSLKVIMEATRNFGDENKLGQGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKTEVRLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDEKRRSSLTWDKRFEIILGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQARTRRVVGTYGYMSPEYAMDGRYSTKSDVFSFGVLLLEIIAGKRNTDSERGRSSPNLIGHVWMLWTEGRALDIVDSTLAQSYSAALVLRCIQIGLLCVQENAADRPSLSEVVFMLGNETPLSPPQKPAFLFNGDRDWPEPSTSGGGSSINEVTATTIIAR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01599 844 ProSiteProfiles PAN/Apple domain profile. 359 440 IPR003609 -
Viun3g01599 844 Pfam S-locus glycoprotein domain 224 336 IPR000858 GO:0048544
Viun3g01599 844 ProSiteProfiles EGF-like domain profile. 300 338 IPR000742 -
Viun3g01599 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Viun3g01599 844 Gene3D Hepatocyte Growth Factor 357 437 - -
Viun3g01599 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 197 IPR036426 -
Viun3g01599 844 ProSiteProfiles Bulb-type lectin domain profile. 38 163 IPR001480 -
Viun3g01599 844 SUPERFAMILY Protein kinase-like (PK-like) 509 816 IPR011009 -
Viun3g01599 844 ProSiteProfiles Protein kinase domain profile. 528 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01599 844 CDD EGF_CA 302 336 - -
Viun3g01599 844 CDD PAN_AP_plant 360 439 - -
Viun3g01599 844 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
Viun3g01599 844 Pfam PAN-like domain 359 425 IPR003609 -
Viun3g01599 844 PIRSF SRK 10 844 IPR024171 GO:0004674
Viun3g01599 844 SMART serkin_6 528 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01599 844 Pfam D-mannose binding lectin 86 192 IPR001480 -
Viun3g01599 844 Gene3D Phosphorylase Kinase; domain 1 489 603 - -
Viun3g01599 844 SMART ntp_6 360 439 IPR003609 -
Viun3g01599 844 SMART blect_4 44 166 IPR001480 -
Viun3g01599 844 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Viun3g01599 844 CDD STKc_IRAK 534 799 - -
Viun3g01599 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 492 603 - -
Viun3g01599 844 Gene3D - 34 164 IPR036426 -
Viun3g01599 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 33 163 - -
Viun3g01599 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Viun3g01599 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 27 791 - -
Viun3g01599 844 Pfam Protein tyrosine and serine/threonine kinase 532 796 IPR001245 GO:0004672|GO:0006468
Viun3g01599 844 CDD B_lectin 47 166 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01599 Viun-Chr3 10853989 10857919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01599 516 844 Receptor kinase-like Gene Family AT4G11530 56.805 8.57e-124 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01599 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01599 - - tpra:123914661 1242.25