Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01598 ATGAACGAAACCCATAAGCATAAAATATGTATGCTGAGCTCTTTGGTTCTACTCTTCACCTTCAAATTTTGTTCTTGTTCTGATACCATATCTGCGGACAAAACCATCAGAGATGGCGAGCTTCTTGTTTCCAAAGGCAAAACCTTTGCTCTTGGATTTTTCAGTCCAGGAAAATCCAAATCCCGCTACGTTGGAATATGGTTCAACAACGTGCAAGAACAAACGGTTGTTTGGGTTGCAAACAGAGACACTCCCATCAATGATACCTCTGGGGTTCTCTCAATCAACCCAGATGGAAACCTAGTCCTCCACCATAACTATACCACTAGTCCCATTTGGTCTACCAGTGTTTCACTCACCCAATCAAATAGCACCAACGTCATAGCTCAACTCTCAGACCTAGCAAACCTTGTTCTGATTCTTAACGACACCAAAACTGTCCTCTGGCAAAGCTTCGATCATCCCACAGACACCTTGATTTCATATCTAAGAATTGGTTTTGACAGAAGAGCTAACCAGAGTTGGATCCTCCAATCTTGGAAGACAGATGATGACCCCGGAACAGGTTCTTACACATTGGAACTGAGCAGCACAGGGAAGCCACAGTTGTTCTTGTATCACCAGAACCTTCCCCTGTGGCGAGGTGGGTCGTGGAACGGTGAGATATTTATGGGTGTACCCAACATGAAAAGAGATTTGCTTACTTTTAATGTTTCTTTTACGGAAGACGACAACCTCGTAGCGCTCTCGTTTAACCCGCTTGATAAGTCCTTGATCACTTGGGTGGTAGTTCAGCAATCAGGTTTCTTTAATGTATTCACTTGGGATAACCAAAAGAATCAGTGGAACAGGTACTGGTCTGTGCCAATAAACCAATGTGATAATTATGGAACCTGTGGATCCAACGGTAATTGTGACCCTTTGAACTTTGAGGAATTTCGGTGTACTTGTCTACCTGGGTTTGAACCCAAATCCCCACATGATTGGTACGATAACAGAGATGGGTCAGAAGGGTGCGTGAGGAAGAAAGGTGTATCCGTTTGTGGGAATGGAGAAGGGTTTGTGAAACTTGAAGGCTTGAAGCTTCCTGATACCTCTGAGGCAACTGCCAAAGAGGGCTGGAGTTTGAATCAGTGTGAAGAGGATTGCTTGAGAAACTGCTCTTGCACTGCTTATGCAGTTCTTGATGTGAGGAATGGTGGAAGTGGGTGCTTGGCATGGCATGGAAATTTAATAGACATACAAAAACTGAGTGATCAAGGCCAAGATTTATTTGTTCGTGTTGATGCAGAAGAACTAGCAAATTATAACAAAAAGACAAAAGGATTACGCGGTAAAACGAGGATGGCTGTAATTGTGACTGCTTCTGCAGTCGCAAGTATCATTATCCTCTCCTCTCTGTATTACCTGTGGAAGAAGAAAAGCAAAGATAAAGTGATGCAACATTTAAACCAACTTTCCCCTGGACATGAAAACGATATCCAATGCAGCACGCATAGAAATCTTCCATTTTTCAGCCTTAAAGTGTTAATGGAAGCCGTAAGAAATTTTGGTGATGAGAACAAGCTTGGGCAAGGTGGATTTGGTTCTGTCTACAAGGGCTGCCTAGCAAATGGACAAGAGATAGCAGTGAAAAGATTGTCGGAACATTCAGGTCAAGGGACAGAAGAGTTTAAAACTGAAGTTAGATTATTAGTTAAGCTTCAACACAGAAATCTGGTGAGGTTACTCGGTTGTTGCTTTGAGAAAGAAGAAAGGATGTTAGTTTATGAATATTTACCAAATAAAAGCTTGGACTTCTTCATATTTGATGAAAAACGAAGGTCATCACTGACTTGGGATAAGCGATTTGAAATCATTTTGGGGATTGCTCGAGGTGTTCTATATCTTCATCAAGATTCAAGGCTGAAAATAATCCATAGAGATCTAAAAGCAAGCAATGTGCTCCTTGATGCTGCAATGAATCCGAAAATCTCAGATTTTGGTATGGCTAGAATATTTAGAGAAGATGAAATCCAAGCAAGGACGAGAAGAGTGGTTGGAACATATGGCTATATGGCACCAGAATATGCAATGGATGGACGGTATTCAACAAAATCTGATGTGTTTAGTTTCGGGGTCTTACTCCTAGAGATCATTGCTGGCAAGAGAAACACAGATAGTGAAAGGGGAAGATCCTCCCCAAATTTAATTGGACATGTGTGGATGCTGTGGACAGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTGGCTCAGTCTTATTCTGCAGCTCTTGTTCTGAGGTGCATTCAGATTGGTCTATTGTGTGTGCAAGAAAATGCAGCGAATAGACCATCTTTGTCAGAAGTTGTTTTTATGCTGGGCAATGAAACACCTCTTTCCCGACCCCAAAAGCCAGCATTTTTATTGAATGGAGATTTGGTGGAGTCATCAACATCAGGGGGGGATCATCAATAA 2460 0.4203 MNETHKHKICMLSSLVLLFTFKFCSCSDTISADKTIRDGELLVSKGKTFALGFFSPGKSKSRYVGIWFNNVQEQTVVWVANRDTPINDTSGVLSINPDGNLVLHHNYTTSPIWSTSVSLTQSNSTNVIAQLSDLANLVLILNDTKTVLWQSFDHPTDTLISYLRIGFDRRANQSWILQSWKTDDDPGTGSYTLELSSTGKPQLFLYHQNLPLWRGGSWNGEIFMGVPNMKRDLLTFNVSFTEDDNLVALSFNPLDKSLITWVVVQQSGFFNVFTWDNQKNQWNRYWSVPINQCDNYGTCGSNGNCDPLNFEEFRCTCLPGFEPKSPHDWYDNRDGSEGCVRKKGVSVCGNGEGFVKLEGLKLPDTSEATAKEGWSLNQCEEDCLRNCSCTAYAVLDVRNGGSGCLAWHGNLIDIQKLSDQGQDLFVRVDAEELANYNKKTKGLRGKTRMAVIVTASAVASIIILSSLYYLWKKKSKDKVMQHLNQLSPGHENDIQCSTHRNLPFFSLKVLMEAVRNFGDENKLGQGGFGSVYKGCLANGQEIAVKRLSEHSGQGTEEFKTEVRLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDEKRRSSLTWDKRFEIILGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFREDEIQARTRRVVGTYGYMAPEYAMDGRYSTKSDVFSFGVLLLEIIAGKRNTDSERGRSSPNLIGHVWMLWTEGRALDIVDSTLAQSYSAALVLRCIQIGLLCVQENAANRPSLSEVVFMLGNETPLSRPQKPAFLLNGDLVESSTSGGDHQ 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01598 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 186 IPR036426 -
Viun3g01598 819 Gene3D Transferase(Phosphotransferase) domain 1 593 797 - -
Viun3g01598 819 ProSiteProfiles PAN/Apple domain profile. 348 429 IPR003609 -
Viun3g01598 819 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Viun3g01598 819 Pfam D-mannose binding lectin 75 181 IPR001480 -
Viun3g01598 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 481 592 - -
Viun3g01598 819 SUPERFAMILY Protein kinase-like (PK-like) 501 801 IPR011009 -
Viun3g01598 819 SMART blect_4 33 155 IPR001480 -
Viun3g01598 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 152 - -
Viun3g01598 819 Gene3D - 23 153 IPR036426 -
Viun3g01598 819 Gene3D Hepatocyte Growth Factor 346 426 - -
Viun3g01598 819 CDD PAN_AP_plant 349 428 - -
Viun3g01598 819 CDD B_lectin 33 155 IPR001480 -
Viun3g01598 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 780 - -
Viun3g01598 819 Pfam Protein tyrosine and serine/threonine kinase 521 785 IPR001245 GO:0004672|GO:0006468
Viun3g01598 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 796 - -
Viun3g01598 819 PIRSF SRK 1 818 IPR024171 GO:0004674
Viun3g01598 819 ProSiteProfiles Bulb-type lectin domain profile. 27 152 IPR001480 -
Viun3g01598 819 ProSiteProfiles EGF-like domain profile. 289 327 IPR000742 -
Viun3g01598 819 Pfam S-locus glycoprotein domain 213 325 IPR000858 GO:0048544
Viun3g01598 819 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Viun3g01598 819 Pfam PAN-like domain 348 414 IPR003609 -
Viun3g01598 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Viun3g01598 819 ProSiteProfiles Protein kinase domain profile. 517 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01598 819 SMART ntp_6 349 428 IPR003609 -
Viun3g01598 819 SMART serkin_6 517 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01598 819 CDD STKc_IRAK 523 788 - -
Viun3g01598 819 CDD EGF_CA 290 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01598 Viun-Chr3 10843429 10847019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01598 505 810 Receptor kinase-like Gene Family AT4G11530 58.442 9.99e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01598 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01598 - - tpra:123914661 1216.45