Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01596 ATGGGAGGTTCCAATCACCTCTTCACATTCTTCGTTTTATGCTTCTTCACCGCTTTTTTCACTTTCTTCCCCACACTTTCCATTTCCACAGATACCTTAACAAAATCCCAATCCCTCCACACCAACCAAACCCTCCTCTCCCCAAGTGCAATTTTCGAGCTTGGTTTCTTTTCCTACACCAATTCCACCTGGTACTTGGCCATATGGTACAAAACCACCCACCACACAGATAAAACTGTGGTCTGGGTGGCAAATCGTGACACCCCACTTCAAAATTCCAACGCTTTTCTCAAAATACACGACAACGGAAACCTCGTCATCGTAAACCAATCCCAAAAACCTGTTTGGTTCTCCAACCACACCGCACCAATAACCAACCCACTTCTTCAGCTCTTGGATTCCGGGAACCTGGTTCTCCGAGAAGAAAACCAGAATGACCCCACAAGGTTCCTCTGGCAGAGCTTTGATTACCCGACAGATACCTTGTTACCCGGCATGAAACTAGGTTGGAACTTCGACACGGGCATGGAGAAACACATAACCTCCTGGAGGGTCACAAACGAAGACCCTTCAAGCGGGGATTTTTCCTTCAAGCTAAATTACCGTGGCCTGCCGGAAATATTCCTCTGGAACAAGGACCGCGTAATCTACCGTAGTGGACCTTGGAATGGCGACAGATTCAGCGGGGTACCCGAGATGCAACCCGTCACCGATTCCATTAAGTTCACGATCTTTGCGGATGACCACCAAGTATACTACACATTCTCAATTGCCAACCACTCCTTGTTCTCGAGACTCTCTGTGAACTCTGTCGGGGAACTCCAACGCCTCACGTGGATACAAAGCACCCAGGTTTGGAACAAATTCTGGTACGCTCCCAAAGACCAATGCGACAACTACCGAGAGTGCGGTCCCTACGGGGTCTGCGACACCAACGCATCGCCGGTGTGTCAGTGTATCAAAGGGTTCCGCCCCAGGAACCAGCAGGCGTGGAATTTGCGAGATGGGTCTGGTGGGTGTGTGAGGAACACGGGATTGGCGTGTGGGAGTGACAGGTTTCTGCATATGCAGAACGTGAAGTTGCCAGATACAACGTCGGTGTTCGCGAACAGGAGCATGGGGCTAGTGGAGTGCGGGGATTTGTGCCAGAGGAATTGTTCGTGCACTGCTTATGCAAATATTGAGATTAGTAATGGAGGAAGTGGGTGCGTGATGTGGGTTGGTGAGCTTTTGGACCTGAGACGCTACCCTTCTGGAGGGCAAGATCTTTATGTCAGATTGGCGGCTTCTGATGTAGGGGTGGAAGATGATTCTGGCAAGACAAGTAATACAGTAAAGGATATAGGCATTGTAGTTGGTGTTGCAGGTTTTGTACTATTGGCATCTGCCATCTTTATCTTGTGGAAGAAGAGGAAATTGCAACGTGTATTGAAATGGAAGACAGAAAAAAGAGGTTTTTCGGAAAGAAGTCAGGATTTGTTAATGAACGAGGGAGTGTTATCAAGTAACAGAGAACAGTTCGGTGAAAGTAACATGGAGGACCTAGAGTTGCCATTGTTTGATTTTAACACCATAACAATGGCTACAAACAACTTCTCTGAAGAAAACAAACTTGGACAAGGAGGTTTTGGAAGTGTTTACAGAGGCAGGTTGAAGGAAGGCCAGGACATTGCTGTGAAGAGATTATCAAAGAATTCTGGACAAGGAATCGAGGAGTTCAAGAATGAGGTGAAGTTAATTGTGAAGCTTCAGCATCGAAATCTAGTTCGTTTACTTGGTTGCAGCATTCAGATGGATGAGAAGATGCTGGTCTATGAGTACATGGAAAACAGAAGCCTTGATGCAATTTTGTTTGATAAGGCAAAAAAATCCTCCCTTGATTGGCAAACGCGCTTCAACATCATATGTGGCATTGCTAGAGGGCTTCTATATTTGCACCAAGATTCCAGATTTAGGATCATACACAGGGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAGATGAACCCAAAGATATCAGACTTTGGTATGGCTAGAATTTTTGGCACGGATCAGATAGAAGCAAATACGATGAGAATTGTCGGAACATATGGATACATGTCCCCTGAGTATGCTATGGACGGAGTGTTCTCAGTAAAATCTGATGTTTTTAGTTTTGGGGTTCTTGTGCTGGAGATAGTAAGTGGAAAAAAGAACAGAGGATTCTATTTGGCAAACAAAGAATTGAATCTTCTAGGACATGCATGGAAGTTGTGGATAGAAGGAAATGCGTTGGAAGTGAGAGATTCGTGTATTGAGACATCATATTCAGCATCAGAAGTTCATAGATGCATACAAGTGGGTCTGTTGTGCGTGCAAGAGCGTGCAGAAGACAGGCCAACAATGTCTTCAGTGGTGTTGATGCTGAGTAGTGATACTGCATCAATGTCACAACCCAGAAACCCAGGGTTTTGTCTTGGAAGAAATCCTATGGAAACTGAATCTTCTTCAAGTAAACAAGAAGAATCATGCACTGTGAACCATGTCACTGTCACAATGATAGATGCTAGGTAG 2556 0.4538 MGGSNHLFTFFVLCFFTAFFTFFPTLSISTDTLTKSQSLHTNQTLLSPSAIFELGFFSYTNSTWYLAIWYKTTHHTDKTVVWVANRDTPLQNSNAFLKIHDNGNLVIVNQSQKPVWFSNHTAPITNPLLQLLDSGNLVLREENQNDPTRFLWQSFDYPTDTLLPGMKLGWNFDTGMEKHITSWRVTNEDPSSGDFSFKLNYRGLPEIFLWNKDRVIYRSGPWNGDRFSGVPEMQPVTDSIKFTIFADDHQVYYTFSIANHSLFSRLSVNSVGELQRLTWIQSTQVWNKFWYAPKDQCDNYRECGPYGVCDTNASPVCQCIKGFRPRNQQAWNLRDGSGGCVRNTGLACGSDRFLHMQNVKLPDTTSVFANRSMGLVECGDLCQRNCSCTAYANIEISNGGSGCVMWVGELLDLRRYPSGGQDLYVRLAASDVGVEDDSGKTSNTVKDIGIVVGVAGFVLLASAIFILWKKRKLQRVLKWKTEKRGFSERSQDLLMNEGVLSSNREQFGESNMEDLELPLFDFNTITMATNNFSEENKLGQGGFGSVYRGRLKEGQDIAVKRLSKNSGQGIEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDAILFDKAKKSSLDWQTRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGTDQIEANTMRIVGTYGYMSPEYAMDGVFSVKSDVFSFGVLVLEIVSGKKNRGFYLANKELNLLGHAWKLWIEGNALEVRDSCIETSYSASEVHRCIQVGLLCVQERAEDRPTMSSVVLMLSSDTASMSQPRNPGFCLGRNPMETESSSSKQEESCTVNHVTVTMIDAR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01596 851 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Viun3g01596 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 155 - -
Viun3g01596 851 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 794 - -
Viun3g01596 851 CDD STKc_IRAK 538 803 - -
Viun3g01596 851 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Viun3g01596 851 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Viun3g01596 851 PIRSF SRK 4 851 IPR024171 GO:0004674
Viun3g01596 851 SUPERFAMILY Protein kinase-like (PK-like) 516 832 IPR011009 -
Viun3g01596 851 Pfam D-mannose binding lectin 79 184 IPR001480 -
Viun3g01596 851 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Viun3g01596 851 Gene3D Phosphorylase Kinase; domain 1 507 607 - -
Viun3g01596 851 Pfam Domain of unknown function (DUF3403) 805 851 IPR021820 GO:0004674
Viun3g01596 851 SMART serkin_6 532 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01596 851 SMART ntp_6 348 427 IPR003609 -
Viun3g01596 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 608 811 - -
Viun3g01596 851 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 224 IPR036426 -
Viun3g01596 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Viun3g01596 851 Gene3D - 25 155 IPR036426 -
Viun3g01596 851 Pfam Protein tyrosine and serine/threonine kinase 535 801 IPR001245 GO:0004672|GO:0006468
Viun3g01596 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 498 607 - -
Viun3g01596 851 Pfam Receptor serine/threonine kinase 488 522 IPR022126 GO:0004674
Viun3g01596 851 CDD B_lectin 36 158 IPR001480 -
Viun3g01596 851 Pfam PAN-like domain 348 413 IPR003609 -
Viun3g01596 851 CDD PAN_AP_plant 346 428 - -
Viun3g01596 851 SMART blect_4 36 158 IPR001480 -
Viun3g01596 851 Gene3D Transferase(Phosphotransferase) domain 1 608 815 - -
Viun3g01596 851 ProSiteProfiles Protein kinase domain profile. 532 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01596 Viun-Chr3 10832906 10839281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01596 520 851 Receptor kinase-like Gene Family AT4G11530 58.457 1.33e-132 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01596 PK_Tyr_Ser-Thr 6.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01596 - - gmx:106799702 1457.2