Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01592 ATGGGCATGTCCACTGCACCCAAATATACAAACTTTCTGCTTCTTCTCCTCTTTCTCTTCTCTTTTCATGCCTTCTTCTCTCATGCTGCCAATTCCCTAACAGTAGGCAGAGAAATCAGAGACAGCAATGGTACCGACAACTTGGTGTCAGAAGACCGCAGCTTTGAAATGGGTTTCTTCGGTTTTGATAACTCTTTGAGGTACGTTGGGATTTGGTACCACAACTTTCCGAGTTCAGCCACAGCATTCATATGGGTAGCAAATAGAGAGAAACCCATCATGGGAAGAGGAGGTTCCATCAAAATCAAAGGTGACGGAAACTTGATTGTTGTCGATGGAGAGAACAACGAGGTTTGGTCAACTAACAAGTCGATGTCAACGAACAACACAAAAGCTGTTCTTGGTGATGATGGGAACCTTGTTCTTTCAGAAGAATCAGAGCATGGGAAAGTTGTGTGGCAAAGCTTTGAGAACCCAACGGATACCTTCGTGCCGGGTATGTCCCTACCAATTAATGGTGGAATGGGTATGTTCAGGTCGTGGAAATCAGCAACGGATCCTTCACCGGGAAACTACTCAATGGGGGTTGACTCTGGGGGATCGACGATACAGATTTTGATTTTGGATGGGGAGAAAAGGAGGTGGAGAACTGGGTATTGGGATGGTAGAGTATTCACTGGTGTCTCCAATATGACAGGAAGCTCTCTTTTTGGTTTTAAAAATAACGGGAATGAGTTTACATATACGTGGAATGAAACTGAAAAGGTGAGGTTTCAGATAACTTGGGATGGGTTTGAAAAGAAGTTTGTATCGAATGAAGAAGAGACACTGTGGAATAATACACAACACGAGCCTTATAATAAGTGTGAGCATTATAATTTCTGTGGCAATTTTGCAGTGTGTGATATCTCTAAGGCATCTGTTTGTAGTTGCTTGCACGGGTTTCAACAAGGGGAATTGAGTGAGTGGAATGGGGGAAATTCAGGGGGTTGTAAGAGGAGGACTCCACTGAAGGCTGAGAGAAATAGTTCTGGAACTGAGGTTAGTGTTGCCGATGATGGTTTCTTCGTTCAAAGGTGTACAAAGTTGCCAGATTTTGCACGTGTGGAGAGTCCGGGTGATGATGGGGATTGTAAGCGGTTTTGTCTGCAGAATAGTTCTTGTACTGCGTATTCATATACAATTGGAATTGGGTGCATGATTTGGTATGTGGACTTGGTTGATGTTCAACACACTGAAAATGATATTGGAAGTGTACTCAACATCCGTCTTGCTGATTCTGAGTTAGAAGCAAGCGACGGAGAGAAAAAGTCCAAAACTTGGATAATAATAATAATAGCTGTTGTGGTGGGGCTGATCTGCCTTGGGATCTTTGTATTGCTGGTATGGAGGTTTAAGAGAAAACGTAAAGTTTCCTCAGCTTCTGCTAACAACATTGCTGAGTTTCCAATCATTGATCCAACGAGGAGCACAGATTTATCGACAGAATTTTCAGTATCAACTGACTTAGGTTTGGAAGGGAATAAGGCAGAACTTCCATTGTTCACATTTAGCTTCATTGCAGCAGCAACAGACAATTTCTCCGAAAAAAATAAGCTGGGACAAGGGGGATTTGGTCCTGTATACAAGGGGAAGCTTCCAGGAGGAGAGGAAATAGCTGTTAAGAGGCTTTCAAGAAAGTCTAGTCAAGGATTAGAGGAGTTCAAGAATGAAATGATGCTAATAGCCAAACTACAACATAGAAATCTGGTTAGATTACTTGGATGTTCAATTCAGGGAGAAGAAAAAATGCTGGTATATGAGTACTTGCCAAACAAAAGCTTGGACTGTTTTTTATTTGATCCTGTGAAGCAAACACAACTAGACTGGACAAAGCGCTTTGAAATAATCGAAGGCATTGCAAGAGGGCTACTTTACCTGCACCAGGATTCAAGACTACGAATAATTCATCGGGATCTTAAAGCAAGCAATATTTTATTAGATGAAAGCATGCATCCAAAAATTTCAGACTTTGGCTTAGCCAGAATATTTGGAGGAAACCAAAATGAAGCAAGCACAAACAGAGTGGTTGGTACATATGGCTATATGTCGCCAGAATATGCAATGGAAGGTCTCTTTTCGGTTAAATCTGATGTCTATAGTTTTGGTGTACTGTTACTAGAGATTATGAGTGGCCGCAGGAACACTAGCTTTCGCAACACAGAAGATTCAAGTCTCATAGGACATGCCTGGCGCATGTGGAGTGAGCAGAGAGTAATGGAGCTTCTTGATTCTTCCATTGGTGATTCAACTCCAAAGAGTAAAGCATTGAGATTCATACACATAGCAATGTTATGCGTGCAAGACTCAGCATCTCGCAGACCAAACATGGCTTCTGTATTGTTAATGCTGGCAAGTGAAGCCACAACTCTTCCTCTGCCTAAACAACCTTTGGTCACTGCTTCCATGAGGAAATTTGATGATGGAGATCAATCTTATAGCGAAGGCCTTGACGTGTCAAATGATTTGACAGTTACAATGGTGACAGGGAGATAA 2535 0.4205 MGMSTAPKYTNFLLLLLFLFSFHAFFSHAANSLTVGREIRDSNGTDNLVSEDRSFEMGFFGFDNSLRYVGIWYHNFPSSATAFIWVANREKPIMGRGGSIKIKGDGNLIVVDGENNEVWSTNKSMSTNNTKAVLGDDGNLVLSEESEHGKVVWQSFENPTDTFVPGMSLPINGGMGMFRSWKSATDPSPGNYSMGVDSGGSTIQILILDGEKRRWRTGYWDGRVFTGVSNMTGSSLFGFKNNGNEFTYTWNETEKVRFQITWDGFEKKFVSNEEETLWNNTQHEPYNKCEHYNFCGNFAVCDISKASVCSCLHGFQQGELSEWNGGNSGGCKRRTPLKAERNSSGTEVSVADDGFFVQRCTKLPDFARVESPGDDGDCKRFCLQNSSCTAYSYTIGIGCMIWYVDLVDVQHTENDIGSVLNIRLADSELEASDGEKKSKTWIIIIIAVVVGLICLGIFVLLVWRFKRKRKVSSASANNIAEFPIIDPTRSTDLSTEFSVSTDLGLEGNKAELPLFTFSFIAAATDNFSEKNKLGQGGFGPVYKGKLPGGEEIAVKRLSRKSSQGLEEFKNEMMLIAKLQHRNLVRLLGCSIQGEEKMLVYEYLPNKSLDCFLFDPVKQTQLDWTKRFEIIEGIARGLLYLHQDSRLRIIHRDLKASNILLDESMHPKISDFGLARIFGGNQNEASTNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIMSGRRNTSFRNTEDSSLIGHAWRMWSEQRVMELLDSSIGDSTPKSKALRFIHIAMLCVQDSASRRPNMASVLLMLASEATTLPLPKQPLVTASMRKFDDGDQSYSEGLDVSNDLTVTMVTGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01592 844 PIRSF SRK 3 844 IPR024171 GO:0004674
Viun3g01592 844 SMART blect_4 39 159 IPR001480 -
Viun3g01592 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 494 602 - -
Viun3g01592 844 SMART ntp_6 350 424 IPR003609 -
Viun3g01592 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Viun3g01592 844 ProSiteProfiles Protein kinase domain profile. 527 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01592 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 156 - -
Viun3g01592 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 788 - -
Viun3g01592 844 Pfam S-locus glycoprotein domain 215 317 IPR000858 GO:0048544
Viun3g01592 844 Pfam D-mannose binding lectin 83 181 IPR001480 -
Viun3g01592 844 Gene3D Transferase(Phosphotransferase) domain 1 603 805 - -
Viun3g01592 844 Pfam Protein tyrosine and serine/threonine kinase 530 794 IPR001245 GO:0004672|GO:0006468
Viun3g01592 844 Gene3D - 24 156 IPR036426 -
Viun3g01592 844 SMART serkin_6 527 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01592 844 SUPERFAMILY Protein kinase-like (PK-like) 511 820 IPR011009 -
Viun3g01592 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 187 IPR036426 -
Viun3g01592 844 CDD B_lectin 48 159 IPR001480 -
Viun3g01592 844 Gene3D Phosphorylase Kinase; domain 1 493 602 - -
Viun3g01592 844 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Viun3g01592 844 Pfam PAN-like domain 352 409 IPR003609 -
Viun3g01592 844 CDD PAN_AP_plant 352 425 - -
Viun3g01592 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 603 805 - -
Viun3g01592 844 CDD STKc_IRAK 533 797 - -
Viun3g01592 844 ProSiteProfiles PAN/Apple domain profile. 350 425 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01592 Viun-Chr3 10809387 10813187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01592 515 839 Receptor kinase-like Gene Family AT4G11530 59.337 3.28e-133 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01592 PK_Tyr_Ser-Thr 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01592 - - vum:124821534 1560.04