Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01587 ATGACGAAAAAACCCAAGGCGGAGGGAGCGGAGGAGCCTTTGCCGGACCACCTCCGTTGCGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGCCAGTGAAGGACAATCTTAAGCTCTGCGAGATTCACTACCTCCAGGGTCGACATCGGCAGTACAAGGAGAAGGTTCCGGAGTCCTTGAAGCTTCACCGGAAGCGCAAGACGAGCGACGAGGAGCCTAGTGCTGTGGACAATGTCGAATCTAGGGCAAGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAGGCTTTCGGAGGGTTCCGAGTCGCTGGTGGCGGCGGCTCCTTCTCCCTCGAAGAAGAAGGCGCTGAAGCAGGGCGATATGCAGTTGGAGCTCATAAGGATGGTTCTGAAGAGAGAGGCGGAGAAGAAGAACAAAAACAACAAGGGCAAGAAGAAAAATAAGAAGAAGAACAAGAAGAAGAAGAAAAAAGAGGAGGAAGAGGAATTGTGTTATGGTGCAGGGGAGTTGAGGAGGGAATTGCCGAATGGTGTGATGGAAATCTCTCCGGCTTCGCCGACTCATGATTACGACAATGTGGCTTCGCATTGTGACGTGAAAGTTGGTGTTGATTCTAAAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGCAGGGAAGTTGCAGATTGCGCCGTATGGATCGAATTTGAAGAAGCGTACCAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGAGTCTTGCAATCTCATCCAGTGTTCGAGCTGTGAGAGGGAGTTTTTCTGCATGGATTGCATTAAAGAGCGGTATTTGGACACTCAAAAAGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAGCTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACTGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCATATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAGTTAAAGGAAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAGACACCCATTTTGGATCTCCATAGAAGCTGTCCGAGCTGTTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTCAGTCAGGGAAAAGCTTTTGGAGAAATTAACTTATCTACGTTCGATCGACATGATAAAATGAAAAGTAGCAGTGCTAGTGAGAGCCAGACTTTGGACGAGAAGGCCATATCTAGTGGCAATTTAACTGATACTTCAATATTGACTGAGTGGACCAACTGTAATGGCATTGATAGTCTGTCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAATAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAATTGGATCAAAGAGATGGAAGTAAAAGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCGGATAAAAGTTCAAGCTGCTCATTGTGTTTTGACACCGATCACAATACTAACAGATACAAGCAGTTGCAAGAAGCAGCTTTAAGAGAAGATTCCAATGATAATTACTTATTTTGTCCGACAGTGTTGGACATAAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATATTGGTTCAAGATGTTCTCCAAAGTACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAATATTACGAGATATGAGAATAATAAAAATGTACTTGAATCTTGTTTGGATTGGTGGGATGTTGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTAAAACGCCGTCCTCAAAGAAATACTTGGCATGAGATGCTCAAACTAAAAGGGTGGCTTTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGCATCCCTTGTCGGGCCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGATATTGGACCATATCTCTATATTTCTTATGCCTCTGCTGACAAAGAAACTGATTCTGTGACAACACTCTGCTATGACCCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAATTACTGAAAAAGCACAAAACTCTGTGTCAAATGAAGACTATTGGTACTGAGGAGCCACAGGAACAAAAAGTGAATGGAATGAAATTATTGCATGTTGAAGAATTGGAGCAAAGAGGCTTGCAGAGTATGGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACGTCTTGCATCTCAAGTGAAGCTAAAAGAGTTTCTAGTCAGAGCATGGACAGCAATGTTTCCCAGAATGGAGACTGTGATTTCTTTTCTGAATCTGATTCCGGACGCACTTTACTTCTCCTTGGGACTGTTCAAACCAACGAAATCTCTAAACAAGATATTCCTAGAAAACCCTTTGAAAGCTCAAAAAGACATAAAAATAAGTTTTCTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTACCGAAGCTCATAGAATACCTTAAAAGACACCATGATGAATTTTCTTGTACCCGTGACCATCTCAAGAAGATGTTTCACCCAATTCTAGATCAGAACATTTTTCTTGATAGTACTCACAAAAAGAGACTAAAGGAGGAATTTAAGATTGAACCTTGGACTTTTCAGCAACACGTTGGACAAGCTATCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCTAAGTGTTGTGTTCACGCGGTATTGGAATTTGTGTCCCCTGAAAACGTTACCGAGGGTATCCAGTTGATTGATGAGGTGAGACTATTGCCTGAGGAGCATAAAGCAAAAGCAGACATGCTGGAGTTTTAA 3027 0.4258 MTKKPKAEGAEEPLPDHLRCGRTDGRQWRCRRPVKDNLKLCEIHYLQGRHRQYKEKVPESLKLHRKRKTSDEEPSAVDNVESRARRTSRIVKKKRRLSEGSESLVAAAPSPSKKKALKQGDMQLELIRMVLKREAEKKNKNNKGKKKNKKKNKKKKKKEEEEELCYGAGELRRELPNGVMEISPASPTHDYDNVASHCDVKVGVDSKTVTPRYFRSKNVDRVPAGKLQIAPYGSNLKKRTKGKRKKCHWCQRSESCNLIQCSSCEREFFCMDCIKERYLDTQKEVKKACPVCRGACTCKDCSASQCKDSESKEYLTGKSRVDRILHFHYLICMLLPVLKHISEDQNIELETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQEFSQGKAFGEINLSTFDRHDKMKSSSASESQTLDEKAISSGNLTDTSILTEWTNCNGIDSLSCPPTELGGCGNSHLELRSVFPSNWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQEAALREDSNDNYLFCPTVLDISGDNFEHFQKHWGKGHPILVQDVLQSTSNLSWDPLIMFCTYLEQNITRYENNKNVLESCLDWWDVEINIRQYFTGSVKRRPQRNTWHEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMHPLSGLLNLAANLPHGSAKHDIGPYLYISYASADKETDSVTTLCYDPYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMKTIGTEEPQEQKVNGMKLLHVEELEQRGLQSMVEEGMNFFRRVNRTSCISSEAKRVSSQSMDSNVSQNGDCDFFSESDSGRTLLLLGTVQTNEISKQDIPRKPFESSKRHKNKFSEHLGAQWDVFRRQDVPKLIEYLKRHHDEFSCTRDHLKKMFHPILDQNIFLDSTHKKRLKEEFKIEPWTFQQHVGQAIIIPAGCPYQIRNSKCCVHAVLEFVSPENVTEGIQLIDEVRLLPEEHKAKADMLEF 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01587 1008 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 1007 IPR045109 GO:0032454|GO:0033169
Viun3g01587 1008 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Viun3g01587 1008 MobiDBLite consensus disorder prediction 139 154 - -
Viun3g01587 1008 MobiDBLite consensus disorder prediction 52 86 - -
Viun3g01587 1008 MobiDBLite consensus disorder prediction 52 118 - -
Viun3g01587 1008 Gene3D Cupin 552 1002 - -
Viun3g01587 1008 ProSiteProfiles JmjC domain profile. 680 993 IPR003347 -
Viun3g01587 1008 SMART cupin_9 661 993 IPR003347 -
Viun3g01587 1008 MobiDBLite consensus disorder prediction 133 162 - -
Viun3g01587 1008 ProSiteProfiles Zinc finger RING-type profile. 247 293 IPR001841 -
Viun3g01587 1008 Pfam WRC 15 56 IPR014977 -
Viun3g01587 1008 SUPERFAMILY Clavaminate synthase-like 560 1005 - -
Viun3g01587 1008 Coils Coil 132 163 - -
Viun3g01587 1008 MobiDBLite consensus disorder prediction 1 25 - -
Viun3g01587 1008 Pfam JmjC domain, hydroxylase 878 971 IPR003347 -
Viun3g01587 1008 FunFam Uncharacterized protein 549 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01587 Viun-Chr3 10764947 10771502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01587 7 104 GRF Transcription Factor Family AT4G37740 34.615 7.32e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun3g01587 JmjC 2.4e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01587 K15601 - gmx:100810673 1695.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01587 3 10764947 10771502 Viun6g02893 6 32239500 32245790 PCT