Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01582 ATGGGTGATGGAGAAGAATTCGCCGGAGCTTTGGGTCTGCGGCGAGCGGTGGAGCTCATCCTTGCCGTGCTCACTCTCTCGCACTCGATTCGTGTCTTCGCGGGGAAATGGCAGCTCATTCGAAACAAGCTGGAGGAGCTTCACGGAGGTTTAGTTGCCGCCGAGAACTGCGACTCCGGGGAGAGCCCGTCGCTTTCGCGGCTGGTGGCGGCGGTGGCGTCCACCGCGACGGAATGCCACGATCTGTGTCGGCGCTGCGTGGATGTTTCCTACAGCGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGGTGTTCGCGAAGCTCGATGGGCACGCGAGGAAGCTCTCTGAGATATACAAAAAGGGGATTTTAACAAATGGGTTCGCGCTGGTTGTGTCAAAGCCGAGTCTTGGCGCGTCGAAAGAGGACATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGATTGGAGATTTGGGGATGAAACGACAGGCGTTGCGGAACCTCCTAGAAGTTGTGGTGGAGGATGAAAAGTATGTGAAGGTGGTTGTTGACGTGGGTGACGTGGTTCATTTGTTGGTGGGGTTTTTGGGTTCTAATGAGGTGGAAATCCAGGAGGAGAGTGCTAAGGTGGTTTCTGTGGTTGCTGGGTTTGATTCTTACAAAGGGGCTTTGGTTGGGGCGGGGGTGATTGCTCCTTTGGTTAAGGTTCTGGATTGTGGGAGCGATTTGGGGAAGGTTGCGGCGGCGAGGTGTTTGGTGAAGTTGACTGAAAATTCGGACAATGCTTGGTGTGTTTCGGCTCATGGGGGGGTCAGTGTGTTGTTGAAGATTTGTGGTGGTGGTGATTGTGGAGGTGAGTTGGTGGCACCTGCTTGTGGGGTGTTGAGGAATCTGGTTGGTGTTGAGGAGATTAAGAGGTTTATGGTTGATGAGGGTGCTGTGTCAACTTTCATCAAGCTGGTGAGGTCGAAGGAGGAAGCGATTCAGGTGAATTCGATTGGGTTTATTTTGAGTATTGCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGATCAGAGAGGGAGGGATTCGTGCTCTGTTGCGCGTTTTGCATCCTAAGTGGTCTTATTCTTGTAAAACCAGGGAGGTAACAATGAGGGCTGTTGAGGATTTGTGTTTCTCTTCACCTGATTCTGTGGGTGTTTTGATGAGTTATGGCTTTGTGGATCAACTCACATACTACATTCGAAATGGGGAGGTTTCGATTCAGGAATTGGCATTGAAAGTGGCGTTTAGGTTGTCTGGAACATCTGAGGAGGCCAAGAAAGCAATGGGGGACGCAGGGTTTATGCCAGAGTTTGTTAAGTTTCTTAATGCAAAGTCCTTTGAAGCTCGAGAAATGGCAGCTGAGGCACTCTCTGGCATGGTTACGGTTCCTAGGAACAGAAAGCGATTCGTGCAGGATGACCATAATATTACCCTTCTTCTGCAGTTGCTTGATCCTGAGGAGGGGAATTCTGGTAATAAAAAGTTCTTAATCTCTATATTAATGTCCTTATCGAGTTGCACTAGTGGGAGGAAAAAGATTGTGAGTTCTGAATATGCAAAAAACATAGAAAAACTCGCTGAAGTTTCTTCTGACGCCAAGAAACTTGTGAAGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAATGGAATCTGGCACTCATGA 1698 0.4959 MGDGEEFAGALGLRRAVELILAVLTLSHSIRVFAGKWQLIRNKLEELHGGLVAAENCDSGESPSLSRLVAAVASTATECHDLCRRCVDVSYSGKLLMQSDLDVVFAKLDGHARKLSEIYKKGILTNGFALVVSKPSLGASKEDMRFYVRDLTTRMKIGDLGMKRQALRNLLEVVVEDEKYVKVVVDVGDVVHLLVGFLGSNEVEIQEESAKVVSVVAGFDSYKGALVGAGVIAPLVKVLDCGSDLGKVAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGGDCGGELVAPACGVLRNLVGVEEIKRFMVDEGAVSTFIKLVRSKEEAIQVNSIGFILSIASGDELVRQMVIREGGIRALLRVLHPKWSYSCKTREVTMRAVEDLCFSSPDSVGVLMSYGFVDQLTYYIRNGEVSIQELALKVAFRLSGTSEEAKKAMGDAGFMPEFVKFLNAKSFEAREMAAEALSGMVTVPRNRKRFVQDDHNITLLLQLLDPEEGNSGNKKFLISILMSLSSCTSGRKKIVSSEYAKNIEKLAEVSSDAKKLVKKLSTNRFRSMLNGIWHS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01582 565 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 315 IPR000225 GO:0005515
Viun3g01582 565 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 564 - -
Viun3g01582 565 SUPERFAMILY ARM repeat 138 519 IPR016024 -
Viun3g01582 565 SMART arm_5 260 302 IPR000225 GO:0005515
Viun3g01582 565 SMART arm_5 177 218 IPR000225 GO:0005515
Viun3g01582 565 SMART arm_5 219 259 IPR000225 GO:0005515
Viun3g01582 565 SMART arm_5 345 388 IPR000225 GO:0005515
Viun3g01582 565 SMART arm_5 303 343 IPR000225 GO:0005515
Viun3g01582 565 SMART arm_5 432 472 IPR000225 GO:0005515
Viun3g01582 565 Gene3D - 147 554 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01582 Viun-Chr3 10673732 10676327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01582 159 362 U-box Gene Family AT2G23140 24.510 6.27e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01582 - - gmx:100809382 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01582 3 10673732 10676327 Viun6g02881 6 32191486 32193440 PCT