Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01580 ATGCGGAATTTCACTTTCTTCGAACGAGTTTCTAGAGCTTTCCGTGACCATGGTTCCAACTTCAAGCTTCTCCTTCTCTGCACCACCGTTAGTGGTGGAGGGGTTCTGGCTTACGCAGAGGCTGTAGGGGCATCTGAAGCGGCGGTGCCGGAGAAGAAAAAGGTGGTGGTGCTGGGAACAGGGTGGGCTGGCACGAGTTTCTTGAAGAATCTGAACAATCCCAGATATGAGGTTCATGTGGTCTCGCCTCGCAATTACTTTGCATTCACTCCTTTGCTGCCCAGTGTTACCTGCGGCACCGTGGAAGCCCGTAGCATTGTCGAACCTGTCCGCAATATTTTTCGGAAGAAAATGGTGGACGTTCAATTCAGTGAAGCAGAATGTCTTAAGATTGACGCAGCAAACAGGAAGGTATACTGCCGGTCTAATATAAGTAATAACGAGAAAGAAGAGTTTGTGGTGGACTATGACTACCTAATCATAGCGGTCGGAGCAAATGTCAACACATTTAATACTCCGGGGGTGACTGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCGCAGAAGATTAGAAGAACCGTTATTGACTGCTTCGAGAGAGCAAGTTTGCCAAGTGTAAGTGAGGAAGAAAAGAAGAGAATTCTTCACTTTGCTATTGTTGGAGGTGGTCCAACTGGAGTTGAGTTTGCAGCCTCACTACATGATTTTGTCACTGAGGATTTGGTCAAGTTATATCCTGGGATAAAAGATTTAGTTAAAATTACGCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTACTTTTGCTGAAGATAAGTTTCGAAGAGATGGTATTGATGTCAAAACAGGATCCATGGTTGTGAAGGTTTCTGATAAAGAAATTTCTACTAAGGAAATGAAAAATGGAGGAGAAATTACCACAATTCCATATGGAATGGCTGTCTGGTCAACTGGTATCGGCACTCGTCCATTTATAAAAGATTTTATGTCACAAATTGGTCAGACTAATAGACGGGCCATAGCTACTGATGAGTGGTTGAGAGTTGAATCAACCAGCAATGTGTATGCACTTGGTGACTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCTGACAAGGACAATTCAGGAACTCTTACTGTCAAGGAATTTCAGGAGGTATTGGATGACATCTGTGAGAGATACCCTCAGGTGGGGCTATATCTAAAGAGTAACCATATGCACGACCTTGCTGATTTGTTGAAAGAGTCCAAGGGAGATGTTGAAAAAGAATCTATTGAACTGAATATCGAAGAACTCAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCGCAGGTCGCATCTCAGCAAGGCACCTACCTGGCCCAGTGCTTTAATCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCCATCAGATTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTCGCTCCTCTAGGAGGAGAGCAAACCGCTGCACAGCTTCCCGGTGATTGGGTTTCAATTGGACACAGCAGTCAATGGCTGTGGTATTCCGTTTATGCAAGCAAGCAAGTAAGCTGGCGCACAAGAGCGTTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGATTCAAGTCAAATATGA 1731 0.4419 MRNFTFFERVSRAFRDHGSNFKLLLLCTTVSGGGVLAYAEAVGASEAAVPEKKKVVVLGTGWAGTSFLKNLNNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKMVDVQFSEAECLKIDAANRKVYCRSNISNNEKEEFVVDYDYLIIAVGANVNTFNTPGVTENCHFLKEVEDAQKIRRTVIDCFERASLPSVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVTEDLVKLYPGIKDLVKITLLEAGDHILSMFDKRITTFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIKDFMSQIGQTNRRAIATDEWLRVESTSNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVGLYLKSNHMHDLADLLKESKGDVEKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAQCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01580 576 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 420 575 - -
Viun3g01580 576 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Viun3g01580 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 376 IPR023753 GO:0016491
Viun3g01580 576 SUPERFAMILY FAD/NAD(P)-binding domain 52 269 IPR036188 -
Viun3g01580 576 Coils Coil 438 458 - -
Viun3g01580 576 PANTHER NADH DEHYDROGENASE 47 576 IPR045024 GO:0003954|GO:0006116
Viun3g01580 576 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Viun3g01580 576 SMART efh_1 378 406 IPR002048 GO:0005509
Viun3g01580 576 SUPERFAMILY EF-hand 329 463 IPR011992 -
Viun3g01580 576 SUPERFAMILY FAD/NAD(P)-binding domain 212 371 IPR036188 -
Viun3g01580 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 217 235 - -
Viun3g01580 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Viun3g01580 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 156 174 - -
Viun3g01580 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 346 368 - -
Viun3g01580 576 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 403 - -
Viun3g01580 576 Gene3D - 44 405 - -
Viun3g01580 576 Gene3D - 418 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01580 Viun-Chr3 10616354 10621246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01580 1 576 EF-hand Containing Proteins AT4G05020 71.108 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01580 K03885 - gmx:100809915 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01580 3 10616354 10621246 Viun6g02880 6 32178971 32184437 PCT