Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01540 ATGGGTTGTTGGAATTCAGACATGAATTTGTACATTTTCTTCTTTTCAATGTTGATTTTCGGTGCAACTTTCTGTGTTGCGGACACTGATCCTCTTGATGTTGCGGCAATCAATAGTTTGTATGTGGCTCTTGGCTCACCACCCCTCGAGGGGTGGAAAGCCATAGGAGGAGATCCATGCTTGGAACAATGGGAAGGTGTGCGTTGTGTCTTCTCCAACATAACTGCTTTGCTACTGGGAGGCATGAGTTTAAGTGGACAACTGGGAAGTAATTTGGATTTCCCATCCATCATAGAATTGGATCTTAGCAACAACCAGATTGGAGGGGCCATTCCATCCACTTTGTCCCCTACTTTAAGGAACTTGTCACTCTCAGCTAATCAATTAAATGGAAGCATTCCAGATGCCTTGTCCTCATTAACTCAATTGTCAGACTTGTCATTAAAAGATAACCATCTGAAAGGAGAAATTCCAGATGCATTTCTACACTTCACTGATTTGGTGAATATGGATCTGTCTGGAAACAACTTGAGTGGTCAGCTGCCTCCTTCAATGGGGAATTTGTCATCTCTTACCACATTACATTTGCAGAACAATCAACTTTCTGGGACCCTTTTTGTTTTGCAGGACCTCGCTCTTCAGGATCTGAATATAGAGAACAATATATTCTCTGGGCCAATTCCTCCGGAGTTGTTGAGTATCCCTAATCTGAGAAAAGATGGGAATCCGTTTAATACTACTATCATTCCATCACCTCCAGCTGCTTCCCCTGCACCCCTTGCTATGGCTCCTTCCCCTGCAATATCACCTTGGAAAGTGGCCAATAATCCATCTGCTACCACCATAAAAGCACCAATGCCTGCAATTGCTGAGAGGTCTTTCAGAACCAAGAAATTAGTTTGGATTGTTGGTGCAGGATTTTTAATATTTATTGCATTAGGAGTTTGTCTTCTAATGTTGTGGTTCTTTAAGAGAAAACCAGAGAACAAGAGTTATAAGAAACATAACATGAACGTGTATAAAAGATCTTTGCATAAACGTACAAGCAGTGACTCCCCTTTTGAAGCAACTGATGATGAGGAGAAAGGATGGAGTTCAAAACTTCCACCCTTGCAGCCAGCACCACCACATCAACTTCCAATCATCCCTGGAGAGAATTTGATCATTAATCGAGCTATATTTGGTGAAGCAACCAAAAGACAAATTGTAACAAATTCCATCAAAGTTTATACTGTTGCATCACTTCAGCAATACACAAATAGTTTTTCCCTAGAAAATTATATTGGGGAAGGCATGCTTGGCCCTGTTTATAGGGCTGAACTCCCTGATGGAAAGTTACTGGCAGTTAGGAAGCTGAATATTACTGCTTCTATTGGCCTAAATCACGAACAGTTTCTTCAATTAGCTTCCAGTGTCTCCAAAATTCAACATGCTAATATTGTAAAGCTTATGGGTTACTGTGCCGAGCATAGCCAACACCTACTTGCATATGAGTATTGCAGTAATGGCACCCTTCATGATGCATTGCATTCAGATGCTAAACTTCAGATTAACCTTTCATGGGATGATCGCATTCAAGTGTCACTTGGAGCGGCAAGAGCTTTAGAGTATTTGCATGAGTACTTTCAGCCACCTATTGTGCACGGAAACTTTACATCTGCTAATGTACTCCTCAATGACAAGTTGGAAGTTCAGGTCTCTGATTGTGGATTAGTTTCTTTACTATCTTCGGGCTCCTCTAGTCGGTTGTCGGGACACCAACTCACAGGTAATGGTTACAGTGCCCCAGAATATGAGAATGGAAGTTATACACTGCAAAGTGATGTCTTTAGCTTCGGAGTTGTAATGCTTGAACTTCTCACTGGCCGAAAATCCTATGACAGCTCACTGCCTCGTGGAGAACAGTTTTTGGTGAGATGGGCAATCCCTCAACTCCATGACATAGATGCATTGTCAAAAATGGTCGACCCCTCTTTAAATGGAGAGTATCCTAAGAAATCCTTGTCACGTTTTGCAGACATTATTTCTTCATGTATACAGCATGAACCTGAATTTCGACCAGCAATGTCAGAAATTGTTCAGGATCTCTTGCGAATGATGTAG 2103 0.4165 MGCWNSDMNLYIFFFSMLIFGATFCVADTDPLDVAAINSLYVALGSPPLEGWKAIGGDPCLEQWEGVRCVFSNITALLLGGMSLSGQLGSNLDFPSIIELDLSNNQIGGAIPSTLSPTLRNLSLSANQLNGSIPDALSSLTQLSDLSLKDNHLKGEIPDAFLHFTDLVNMDLSGNNLSGQLPPSMGNLSSLTTLHLQNNQLSGTLFVLQDLALQDLNIENNIFSGPIPPELLSIPNLRKDGNPFNTTIIPSPPAASPAPLAMAPSPAISPWKVANNPSATTIKAPMPAIAERSFRTKKLVWIVGAGFLIFIALGVCLLMLWFFKRKPENKSYKKHNMNVYKRSLHKRTSSDSPFEATDDEEKGWSSKLPPLQPAPPHQLPIIPGENLIINRAIFGEATKRQIVTNSIKVYTVASLQQYTNSFSLENYIGEGMLGPVYRAELPDGKLLAVRKLNITASIGLNHEQFLQLASSVSKIQHANIVKLMGYCAEHSQHLLAYEYCSNGTLHDALHSDAKLQINLSWDDRIQVSLGAARALEYLHEYFQPPIVHGNFTSANVLLNDKLEVQVSDCGLVSLLSSGSSSRLSGHQLTGNGYSAPEYENGSYTLQSDVFSFGVVMLELLTGRKSYDSSLPRGEQFLVRWAIPQLHDIDALSKMVDPSLNGEYPKKSLSRFADIISSCIQHEPEFRPAMSEIVQDLLRMM 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01540 700 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 391 499 - -
Viun3g01540 700 Gene3D Ribonuclease Inhibitor 35 252 IPR032675 -
Viun3g01540 700 Gene3D Transferase(Phosphotransferase) domain 1 500 700 - -
Viun3g01540 700 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 696 - -
Viun3g01540 700 Pfam Protein tyrosine and serine/threonine kinase 424 696 IPR001245 GO:0004672|GO:0006468
Viun3g01540 700 MobiDBLite consensus disorder prediction 349 371 - -
Viun3g01540 700 Gene3D Phosphorylase Kinase; domain 1 387 499 - -
Viun3g01540 700 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 500 700 - -
Viun3g01540 700 ProSiteProfiles Protein kinase domain profile. 422 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01540 700 MobiDBLite consensus disorder prediction 349 365 - -
Viun3g01540 700 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Viun3g01540 700 SUPERFAMILY Protein kinase-like (PK-like) 403 696 IPR011009 -
Viun3g01540 700 SUPERFAMILY L domain-like 33 238 - -
Viun3g01540 700 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01540 Viun-Chr3 10341198 10348529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01540 19 700 Strubbelig Receptor Gene Family AT4G03390 50.601 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun3g01540 PK_Tyr_Ser-Thr 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01540 - - pvu:PHAVU_002G224200g 1222.99