Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01537 ATGGCGGATGATGTTGTGGACTTTTCGAAACTGTTCGATGGTGATGATGACGACGGTGACATGTTTTATATAGATATGAACACCGTTCAGAAGGTTCTTGATGAAGACGATAATTGTGATTTTCTGGAGAATTTTCCCGATGATTCTTCTTCAAAAAATGCTTCACCCAGTGAATCTGGAACTCATGACTCATTTCAGATACAAAATGGGTCTCAAGTGTTGGAAGAACAACAATTTTCTAGGTTGGGCTTTGCAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGATGCCTCAGATTCTGGTGTCAGAGGTTCAGTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATATTGAACTTGAAAACGAGGGACCTCAATCTCAGGCTTGCTCCTCTCCAAATGCATTTCCTGGTAATCTCAGTAACTCCCTCTCCCCAGGTGAAAGTGATGAAGTTTTCTGCATCGAGAGGAACAGAGTCTCTAAACACGAGGTACCTGCTTGCAGTGTGGAATCAAGTTTCCCTGAGGCACAGTCAAGAAATATATCAATTTATGGAGATAATTTGAATCCAAGTCAGTGGAAAGGTGAAAATGAGATCCAATTCAAGCATTTCCGAGAGGATGTTGAATTTGAAAATACTTCAATCAGTTCTATCGTTGACAATGATGATATAAATATCGAAGGTTATGTTGAAGACACCACTGGAGGAGTTTCTGGGCAACAGGAAAATGATTCGTGTACATCTTTTGAAGCATTTATGGATGCTGATAGATTTTTACATGTTGCAACTTCACCTGATTCTACTATTGGTCAAGGTTCCCATGGTTCCAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACGAGGGAATGCATAGTGGACCCTTTGTTGCTGACTCTTCTCTTGGTAGTTTGCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGCCAAAAGTGTGGAGTTAAATGCTGATATTACATGTATGAACAGTGGCATGCCCTCAAACACTACTGGGTGGACGTCTTTTCAAGATTTGACTGATAATGTTTATCCATCTTTTCATTCTAGGAAAGTTAATTTTGATGACCTGCCATCACTGTCTCTTTCAGCTTGTGATTCATACGTACCATATGGAGACCATTACCAGGATGCTAAGTTCAATGTAGATCAATCCGTGAGACAAACACCTGGTATTTTTTCTTCTGTAGGGTCTCAGGCTTACCAATTTTATGAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAATATCAAGATAGCAATGGTAGAATTGCTAGTTTTCAAGAAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCAGGCACTAATTACCAGTGAGAAACAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGTTCGACATAAACTTGCTGACTCTCATCTTTCAAAAGGAAAAATTCAGAATTTCATTGTCGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCATTGGGAATTCCTCTAACATTTCTCAATCTGCTAGATATGCTGATTCTCAGTCTTACATGGTTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTAAGGGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTTTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATAGCATTAATATTAAAGGAAAGACCTCCATTACTTAATGGGGGCACCAATGCCCACAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGATGTGCTTCCTCAGAACGGTAGAGTAAAGGAAGAATCCAATATTTGTGAGGATAAGTCGAATAGAAATCCAATGAAGAGTATGAATTTGCTAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAAGTAACTAGCCAAACAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCAAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCATGCTGTACCGAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAATGGCAAGAAGAGATCAGATGGAACAGTTCTTGAAACTAATGCTCGCCCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCACAAAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCAAAGCGAAGATGGTGTTTGTCGGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTACGATATGACCCTTATGATGTCTATATATCATTTTGTTCTAAAATTAAGAATCCAATAAGCAGAAATCCAGCAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGAACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCACCTAAATATATAGAGCTGAAAAAGGTTGATTTTTCAACTGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAATGATCCTCCGGAAGATGCGTTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTAGGGTATTCTCAAAAGCCACTCTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCCCTGCTTCTGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAATCACTGCGTAAGCCACAGTCCTATACATCAAAAAGCACTTCTGGGAATAGCACTTTGAGTGAAGATAATGATTGCCCTGGGAACCCCTCGGATGCTGACAATGGGAAATCCTCATTAAATTCTCATGAGTGTCAAAATTTGTCTGATGAGAATAGATACCATAGTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTTCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAAACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCCTTTGGGGAGGATGGAAGTGGTGATCGTCAGAGTCGACTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 4032 0.4045 MADDVVDFSKLFDGDDDDGDMFYIDMNTVQKVLDEDDNCDFLENFPDDSSSKNASPSESGTHDSFQIQNGSQVLEEQQFSRLGFADSVTSCSPFCSDASDSGVRGSVGVSDSVANSWLDIELENEGPQSQACSSPNAFPGNLSNSLSPGESDEVFCIERNRVSKHEVPACSVESSFPEAQSRNISIYGDNLNPSQWKGENEIQFKHFREDVEFENTSISSIVDNDDINIEGYVEDTTGGVSGQQENDSCTSFEAFMDADRFLHVATSPDSTIGQGSHGSSDFIDYHGSSTYYEGMHSGPFVADSSLGSLPNGFCSQLPNDEMMNNMKAKSVELNADITCMNSGMPSNTTGWTSFQDLTDNVYPSFHSRKVNFDDLPSLSLSACDSYVPYGDHYQDAKFNVDQSVRQTPGIFSSVGSQAYQFYENEDNYAVISGISNQYQDSNGRIASFQENVDNLNLQAANISWPHAQALITSEKQFGCVKREGGVRHKLADSHLSKGKIQNFIVEEDPDVCIIEDISHPAPTSRSTIIGNSSNISQSARYADSQSYMVGSTRLKACDERNILRVALQDLSQPKSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGGTNAHKSELDSLNLDVDDDVLPQNGRVKEESNICEDKSNRNPMKSMNLLNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDHAVPSRKRKSPSNSSKNGKKRSDGTVLETNARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYISFCSKIKNPISRNPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSTEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIRLSTSRVFSKATLNSCLSDQGCDNSPGCPASEVEEFEPWSQSQPYESSKIKAALEVLKSLRKPQSYTSKSTSGNSTLSEDNDCPGNPSDADNGKSSLNSHECQNLSDENRYHSDSVTVVGEKAIVFSQWTRMLDLLEACLKKSSINYRRLDGTMSVVSRDKAVKDFNTLPEVSVIIMSLKAASLGLNMVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGSGDRQSRLTVDDLKYLFMM 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01537 1343 SMART helicmild6 1202 1285 IPR001650 -
Viun3g01537 1343 SMART ring_2 1026 1064 IPR001841 -
Viun3g01537 1343 Pfam Zinc finger, C3HC4 type (RING finger) 1026 1062 IPR018957 GO:0046872
Viun3g01537 1343 ProSiteProfiles Zinc finger RING-type profile. 1026 1065 IPR001841 -
Viun3g01537 1343 MobiDBLite consensus disorder prediction 763 785 - -
Viun3g01537 1343 SUPERFAMILY RING/U-box 1023 1074 - -
Viun3g01537 1343 ProSitePatterns Zinc finger RING-type signature. 1041 1050 IPR017907 -
Viun3g01537 1343 Pfam SNF2-related domain 608 987 IPR000330 GO:0005524|GO:0140658
Viun3g01537 1343 Gene3D - 925 1343 IPR027417 -
Viun3g01537 1343 MobiDBLite consensus disorder prediction 44 65 - -
Viun3g01537 1343 CDD DEXDc_SHPRH-like 588 910 - -
Viun3g01537 1343 Gene3D - 770 922 IPR038718 -
Viun3g01537 1343 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 603 872 IPR014001 -
Viun3g01537 1343 MobiDBLite consensus disorder prediction 761 805 - -
Viun3g01537 1343 Gene3D - 683 769 IPR038718 -
Viun3g01537 1343 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 458 1342 - -
Viun3g01537 1343 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1179 1338 IPR001650 -
Viun3g01537 1343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1011 1077 IPR013083 -
Viun3g01537 1343 Coils Coil 438 458 - -
Viun3g01537 1343 CDD SF2_C_SNF 1188 1295 - -
Viun3g01537 1343 SMART ultradead3 584 887 IPR014001 -
Viun3g01537 1343 MobiDBLite consensus disorder prediction 125 144 - -
Viun3g01537 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 910 IPR027417 -
Viun3g01537 1343 Gene3D - 557 647 IPR038718 -
Viun3g01537 1343 MobiDBLite consensus disorder prediction 43 65 - -
Viun3g01537 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 918 1342 IPR027417 -
Viun3g01537 1343 MobiDBLite consensus disorder prediction 1133 1169 - -
Viun3g01537 1343 Pfam Helicase conserved C-terminal domain 1186 1285 IPR001650 -
Viun3g01537 1343 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 793 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01537 Viun-Chr3 10274989 10283708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01537 511 1342 RAD5 or RAD16-like Gene Family AT1G61140 61.321 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun3g01537 SNF2_N 4.9e-68 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01537 3 10274989 10283708 Viun6g02832 6 31950400 31959263 PCT