Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01536 ATGGCGGATGATGTTGTGGACTTTTCGAAACTGTTCGATGGTGATGATGACGACGGTGACATGTTTTATATAGATATGAACACCGTTCAGAAGGTTCTTGATGAAGACGATAATTGTGATTTTCTGGAGAATTTTCCCGATGATTCTTCTTCAAAAAATGCTTCACCCAGTGAATCTGGAACTCATGACTCATTTCAGATACAAAATGGGTCTCAAGTGTTGGAAGAACAACAATTTTCTAGGTTGGGCTTTGCAGATTCAGTCACGAGTTGTTCTCCGTTCTGCTCAGATGCCTCAGATTCTGGTGTCAGAGGTTCAGTTGGTGTATCTGATTCTGTAGCAAATTCTTGGCTTGATATTGAACTTGAAAACGAGGGACCTCAATCTCAGGCTTGCTCCTCTCCAAATGCATTTCCTGGTAATCTCAGTAACTCCCTCTCCCCAGGTGAAAGTGATGAAGTTTTCTGCATCGAGAGGAACAGAGTCTCTAAACACGAGGTACCTGCTTGCAGTGTGGAATCAAGTTTCCCTGAGGCACAGTCAAGAAATATATCAATTTATGGAGATAATTTGAATCCAAGTCAGTGGAAAGATACTTCAATCAGTTCTATCGTTGACAATGATGATATAAATATCGAAGGTTATGTTGAAGACACCACTGGAGGAGTTTCTGGGCAACAGGAAAATGATTCGTGTACATCTTTTGAAGCATTTATGGATGCTGATAGATTTTTACATGTTGCAACTTCACCTGATTCTACTATTGGTCAAGGTTCCCATGGTTCCAGTGATTTCATTGACTACCATGGATCTTCAACTTATTACGAGGGAATGCATAGTGGACCCTTTGTTGCTGACTCTTCTCTTGGTAGTTTGCCAAATGGTTTTTGCTCTCAATTGCCAAATGACGAAATGATGAATAACATGAAGGCCAAAAGTGTGGAGTTAAATGCTGATATTACATGTATGAACAGTGGCATGCCCTCAAACACTACTGGGTGGACGTCTTTTCAAGATTTGACTGATAATGTTTATCCATCTTTTCATTCTAGGAAAGTTAATTTTGATGACCTGCCATCACTGTCTCTTTCAGCTTGTGATTCATACGTACCATATGGAGACCATTACCAGGATGCTAAGTTCAATGTAGATCAATCCGTGAGACAAACACCTGGTATTTTTTCTTCTGTAGGGTCTCAGGCTTACCAATTTTATGAGAATGAGGATAATTATGCAGTTATATCTGGGATATCCAATCAATATCAAGATAGCAATGGTAGAATTGCTAGTTTTCAAGAAAATGTGGACAATTTGAATTTACAAGCTGCAAATATATCTTGGCCCCATGCCCAGGCACTAATTACCAGTGAGAAACAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGTTCGACATAAACTTGCTGACTCTCATCTTTCAAAAGGAAAAATTCAGAATTTCATTGTCGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACAAGTCGATCTACAATCATTGGGAATTCCTCTAACATTTCTCAATCTGCTAGATATGCTGATTCTCAGTCTTACATGGTTGGAAGTACTAGGCTGAAGGCATGTGATGAGCGTAATATATTAAGGGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCTACCAGAAGGGTTGTTGGCAGTTCCTCTTTTAAGGCATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAGCATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATAGCATTAATATTAAAGGAAAGACCTCCATTACTTAATGGGGGCACCAATGCCCACAAAAGTGAATTGGATTCTCTGAATCTGGATGTGGATGATGATGTGCTTCCTCAGAACGGTAGAGTAAAGGAAGAATCCAATATTTGTGAGGATAAGTCGAATAGAAATCCAATGAAGAGTATGAATTTGCTAAACCAAGCAAAGGGAAGGCCATCTGCCGGGACCCTTATTGTTTGTCCCACTAGTGTCCTACGTCAATGGGCAGAGGAGTTGCGTAGCAAAGTAACTAGCCAAACAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAGGTTGCAAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTTCAGCTGACAAAGATGATGAGGAAAAAGGAAATGTTGAAGATCATGCTGTACCGAGTAGGAAAAGAAAAAGTCCCTCTAATTCTAGTAAAAATGGCAAGAAGAGATCAGATGGAACAGTTCTTGAAACTAATGCTCGCCCGCTTGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCACAAAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCAAAGCGAAGATGGTGTTTGTCGGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTACGATATGACCCTTATGATGTCTATATATCATTTTGTTCTAAAATTAAGAATCCAATAAGCAGAAATCCAGCAAACGGATATAGAAAGCTACAAGCTGTCTTGAAGACTATAATGTTACGCCGAACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCACCTAAATATATAGAGCTGAAAAAGGTTGATTTTTCAACTGAGGAACGTGATTTCTATTACAAACTAGAGGCTGATTCACGTGCACAGTTCCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTCCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATATTCGGTTGAGATGGCAAAGACACTTCCTCAGGAAAAACAAATCTCTCTTCTGCAATGTTTAGAGGCTTCTTTGGCCCTCTGTAGCATTTGTAATGATCCTCCGGAAGATGCGTTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATATGTGAACATCTTACTGGTGATGACAACCAGTGCCCTGCTGCAAATTGCAAAATTCGACTGAGCACATCTAGGGTATTCTCAAAAGCCACTCTGAACAGTTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCCCTGCTTCTGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGAATCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAATCACTGCGTAAGCCACAGTCCTATACATCAAAAAGCACTTCTGGGAATAGCACTTTGAGTGAAGATAATGATTGCCCTGGGAACCCCTCGGATGCTGACAATGGGAAATCCTCATTAAATTCTCATGAGTGTCAAAATTTGTCTGATGAGAATAGATACCATAGTGATTCAGTTACTGTCGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAAATCTTCGATTAATTATAGAAGGCTTGATGGAACAATGTCAGTTGTTTCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCCGAGGTATCAGTTATAATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAAACTCGTCCTGTGACTGTCTTGAGATTAACTGTGAAAGATACAGTTGAAGATCGAATTTTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCCTTTGGGGAGGATGGAAGTGGTGATCGTCAGAGTCGACTCACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 3981 0.4052 MADDVVDFSKLFDGDDDDGDMFYIDMNTVQKVLDEDDNCDFLENFPDDSSSKNASPSESGTHDSFQIQNGSQVLEEQQFSRLGFADSVTSCSPFCSDASDSGVRGSVGVSDSVANSWLDIELENEGPQSQACSSPNAFPGNLSNSLSPGESDEVFCIERNRVSKHEVPACSVESSFPEAQSRNISIYGDNLNPSQWKDTSISSIVDNDDINIEGYVEDTTGGVSGQQENDSCTSFEAFMDADRFLHVATSPDSTIGQGSHGSSDFIDYHGSSTYYEGMHSGPFVADSSLGSLPNGFCSQLPNDEMMNNMKAKSVELNADITCMNSGMPSNTTGWTSFQDLTDNVYPSFHSRKVNFDDLPSLSLSACDSYVPYGDHYQDAKFNVDQSVRQTPGIFSSVGSQAYQFYENEDNYAVISGISNQYQDSNGRIASFQENVDNLNLQAANISWPHAQALITSEKQFGCVKREGGVRHKLADSHLSKGKIQNFIVEEDPDVCIIEDISHPAPTSRSTIIGNSSNISQSARYADSQSYMVGSTRLKACDERNILRVALQDLSQPKSEVSLPEGLLAVPLLRHQRIALSWMVQKEASSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGGTNAHKSELDSLNLDVDDDVLPQNGRVKEESNICEDKSNRNPMKSMNLLNQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSQTNLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPSADKDDEEKGNVEDHAVPSRKRKSPSNSSKNGKKRSDGTVLETNARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYDVYISFCSKIKNPISRNPANGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSTEERDFYYKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRYSVEMAKTLPQEKQISLLQCLEASLALCSICNDPPEDAFVSVCGHVFCNQCICEHLTGDDNQCPAANCKIRLSTSRVFSKATLNSCLSDQGCDNSPGCPASEVEEFEPWSQSQPYESSKIKAALEVLKSLRKPQSYTSKSTSGNSTLSEDNDCPGNPSDADNGKSSLNSHECQNLSDENRYHSDSVTVVGEKAIVFSQWTRMLDLLEACLKKSSINYRRLDGTMSVVSRDKAVKDFNTLPEVSVIIMSLKAASLGLNMVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGSGDRQSRLTVDDLKYLFMM 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01536 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 994 1060 IPR013083 -
Viun3g01536 1326 SUPERFAMILY RING/U-box 1006 1057 - -
Viun3g01536 1326 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 586 855 IPR014001 -
Viun3g01536 1326 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 776 905 - -
Viun3g01536 1326 Pfam SNF2-related domain 591 970 IPR000330 GO:0005524|GO:0140658
Viun3g01536 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 1325 IPR027417 -
Viun3g01536 1326 SMART ring_2 1009 1047 IPR001841 -
Viun3g01536 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 893 IPR027417 -
Viun3g01536 1326 Gene3D - 540 630 IPR038718 -
Viun3g01536 1326 Coils Coil 421 441 - -
Viun3g01536 1326 SMART helicmild6 1185 1268 IPR001650 -
Viun3g01536 1326 Gene3D - 753 905 IPR038718 -
Viun3g01536 1326 MobiDBLite consensus disorder prediction 44 65 - -
Viun3g01536 1326 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 395 1325 - -
Viun3g01536 1326 CDD SF2_C_SNF 1171 1278 - -
Viun3g01536 1326 Gene3D - 666 752 IPR038718 -
Viun3g01536 1326 MobiDBLite consensus disorder prediction 746 768 - -
Viun3g01536 1326 MobiDBLite consensus disorder prediction 1116 1152 - -
Viun3g01536 1326 MobiDBLite consensus disorder prediction 125 144 - -
Viun3g01536 1326 CDD DEXDc_SHPRH-like 571 893 - -
Viun3g01536 1326 SMART ultradead3 567 870 IPR014001 -
Viun3g01536 1326 MobiDBLite consensus disorder prediction 43 65 - -
Viun3g01536 1326 MobiDBLite consensus disorder prediction 744 788 - -
Viun3g01536 1326 ProSiteProfiles Zinc finger RING-type profile. 1009 1048 IPR001841 -
Viun3g01536 1326 ProSitePatterns Zinc finger RING-type signature. 1024 1033 IPR017907 -
Viun3g01536 1326 Pfam Zinc finger, C3HC4 type (RING finger) 1009 1045 IPR018957 GO:0046872
Viun3g01536 1326 Gene3D - 908 1326 IPR027417 -
Viun3g01536 1326 Pfam Helicase conserved C-terminal domain 1168 1268 IPR001650 -
Viun3g01536 1326 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1162 1321 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01536 Viun-Chr3 10274989 10283711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01536 494 1325 RAD5 or RAD16-like Gene Family AT1G61140 61.321 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun3g01536 SNF2_N 4.9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01536 - - gmx:100802436 2066.58