Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01532 ATGGACAGCACGGATTCATCTTCAGCTTCTCAGCACCCACACCTCCCTCCAGGCTTTCGCTTCCACCCCACCGACGAAGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTTCTTCCACACCCCTTCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGATCCTTGGGAGCTCCCAAGTAAAGCAACTTTTGGTGAACAAGAGTGGTACTTTTTCAGCCCGAGGGATCGAAAATACCCAAATGGGGTCAGACCCAACAGAGCTGCTACTTCTGGGTATTGGAAAGCCACCGGAACTGACAAGCCTATACTAACTTCTGATGGGCACCAGAAAGTTGGTGTTAAGAAAGCACTTGTTTTCTACGGTGGAAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCATGAGTATAGGCTTGTTCACGATTCCTTTAATTCAACCTCAAAACCTCCTCCTCTTGTTCCTCCAAACAAGAAAAATTCTCTCAGGCTTGATGATTGGGTGTTGTGTCGAATATACAAGAAAAGCAACAGCACCACCGTAACAAGGCCACCATTGATGGAGCATGGGGAGGAGCTTTCAATGGAGAACATGCTTCCAACGATGTCAACTTTGTCAATGGCTAATAACAATACTCAAAATTCTAAACCTCCATCTTCGAGGGGTACGAGTTATGGAGCACTGGGACTTGAAAATGATGACAACTTCTTCGATGGAATCTTAGCCGTTGATCATCATCATCATCATCATCATGAGAGCATGCAAAGTGGTTCTGATAATCCTCACCTTTTCTCTCCAAACTCAAAGGGTGCCAACTTTCCTATGAAACGTGCTCTCACATCTCAACAACTTTGGAACGAGACAGGGTCTCCGGGGTCATCTTCTTCATGTAAGCGATTCCATGGTGATCTTAACAGTGGAAGCAGCAACGCTGAGGACAACGATTCCTTTGTTTCCTTGCTTAGCCAGTTTCCTCAGAACGCAACTTTTCAACCAAACGCGATTCATGGCTCCGTTGGGGATGGTGCGCAGAGGCAACAACACTTTCAACTTCCTGGTATAAATTGGAACTGA 1083 0.4626 MDSTDSSSASQHPHLPPGFRFHPTDEELVVHYLKRKASSTPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVHDSFNSTSKPPPLVPPNKKNSLRLDDWVLCRIYKKSNSTTVTRPPLMEHGEELSMENMLPTMSTLSMANNNTQNSKPPSSRGTSYGALGLENDDNFFDGILAVDHHHHHHHESMQSGSDNPHLFSPNSKGANFPMKRALTSQQLWNETGSPGSSSSCKRFHGDLNSGSSNAEDNDSFVSLLSQFPQNATFQPNAIHGSVGDGAQRQQHFQLPGINWN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01532 360 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g01532 360 MobiDBLite consensus disorder prediction 250 276 - -
Viun3g01532 360 PANTHER NAC TRANSCRIPTION FACTOR 56 15 197 - -
Viun3g01532 360 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Viun3g01532 360 MobiDBLite consensus disorder prediction 209 230 - -
Viun3g01532 360 ProSiteProfiles NAC domain profile. 15 178 IPR003441 GO:0003677|GO:0006355
Viun3g01532 360 Gene3D NAC domain 24 183 IPR036093 GO:0003677|GO:0006355
Viun3g01532 360 FunFam NAC transcription factor 56 24 183 - -
Viun3g01532 360 SUPERFAMILY NAC domain 8 178 IPR036093 GO:0003677|GO:0006355
Viun3g01532 360 MobiDBLite consensus disorder prediction 209 229 - -
Viun3g01532 360 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01532 Viun-Chr3 10221122 10223084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01532 5 360 NAC Transcription Factor Family AT1G61110 52.877 1.21e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g01532 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01532 - - gmx:100797132 613.994