Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01505 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTTAAGAAGAAAAGGAATCCTTCTCATACTCCTAATGAGATTGATGGCTTTCCACTTGATAATGTTAAGAATTTTTCTGATAAAGACCTGAGACTGGCCACTGATAACTATCATCCAAGCAAAAAGCTAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAAATGGAAGACAGGTAGCAGTGAAGACACTTTCAGCTGGGTCAAAGCAAGGAGTTCGAGAATTTTTATCTGAAATTAAAACTATCTCAAATGTTAAACATCCAAACCTAGTTGAATTGGTTGGTTGCTGTGTTCAAGAAACTAATCGCATATTAGTGTATGAATATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGTGCAAGAGGTTCAAATATCAGATTAGACTGGAGAAAAAGATCTGATATTTGCATGGGTACTGCTAGAGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATTGTGCATAGAGACATCAAGGCAAGCAACATACTACTTGACAGACATTTCAAGCCAAAAATAGGAGATTTCGGGTTGGCTAAATTGTTTCCAGATGACATCACTCACATTAGCACAAGGATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCCTGAAGGCTGATGTATATAGTTTTGGTGTTCTCATTCTTGAAATAATCAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCTAACAAGTTCCTCTTGGAATGGGCCTGGCAACTGTATGAAGAAGGGAAACTATTGGAGCTTGTGGATCCAGACATGGTTGAATTTCCTGAGGAAGAGGTAATAAGGTACATGAAGGTTGCTTTTTTCTGCACACAAGCTGCAGCAAGTAGAAGGCCAATGATGTCCCAAGTTGTGAATATGCTGTCGAGGAACACGAGGCTGAATGAAAAGGAACTAACAGCACCAGGGTTTTTCCAGGATTCAGGAACATCGTCTCAGAAGAAATCATCTTTTGAATCCACAAGCTATCAATTTAGCTCTAACCCTTCCAGTATTACTCACTTGGCCCCACGGTGA 1104 0.4112 MSCGCFGASTLKKKRNPSHTPNEIDGFPLDNVKNFSDKDLRLATDNYHPSKKLGRGGFGTVYQGTLKNGRQVAVKTLSAGSKQGVREFLSEIKTISNVKHPNLVELVGCCVQETNRILVYEYVENNSLDRALLGARGSNIRLDWRKRSDICMGTARGLAFLHEELVPHIVHRDIKASNILLDRHFKPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTLKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYEEGKLLELVDPDMVEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVVNMLSRNTRLNEKELTAPGFFQDSGTSSQKKSSFESTSYQFSSNPSSITHLAPR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01505 367 CDD STKc_IRAK 53 319 - -
Viun3g01505 367 FunFam cold-responsive protein kinase 1 18 122 - -
Viun3g01505 367 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 351 - -
Viun3g01505 367 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Viun3g01505 367 SUPERFAMILY Protein kinase-like (PK-like) 31 349 IPR011009 -
Viun3g01505 367 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Viun3g01505 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Viun3g01505 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Viun3g01505 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01505 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01505 367 MobiDBLite consensus disorder prediction 333 367 - -
Viun3g01505 367 MobiDBLite consensus disorder prediction 331 367 - -
Viun3g01505 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Viun3g01505 367 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01505 Viun-Chr3 9934873 9938595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01505 10 366 Receptor kinase-like Gene Family AT1G56120 48.468 5.20e-109 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g01505 PK_Tyr_Ser-Thr 7.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01505 - - gmx:100788143 687.182