Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01490 ATGGTTGATAAGAGTGTGGTAGAACTGAACCTTGGTTTAGGTAAAAACAACGACAACGTTGTTGGTGGTGGTCATGCACATGCAGGGCAGTCACCGAGGCAAAGGTGTCCAGCGCCATTTTTGTTGAAGACTTACGATCTGTTGGAAGAAGGTGAGAGTGAAGATATCACAAAAATTGTGTCGTGGAATGAAGAAGGAACTTCCTTTGTTGTGTGGTCTCCTGCAGAATTCTCTGAGCACACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACTTATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTGGGTGAAATCACAAGAAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTTAAGTCTTCTTCTGAGGAAAACGCCACGAGTTCCACAGAAGAAAACAATGAGCAAGTACTTATGGAGGAGAACAAGAACCTGAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGATGAGTGCAAAGAACTTGAAATGAAGTTGTTGGCATGCCTCTCTCAGTTTATGGACACCCAACAAAGTAAAATTAGGAGACTGTGTTAG 633 0.4234 MVDKSVVELNLGLGKNNDNVVGGGHAHAGQSPRQRCPAPFLLKTYDLLEEGESEDITKIVSWNEEGTSFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENATSSTEENNEQVLMEENKNLKKERLELQMQIDECKELEMKLLACLSQFMDTQQSKIRRLC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01490 210 Coils Coil 153 190 - -
Viun3g01490 210 Gene3D - 32 133 IPR036388 -
Viun3g01490 210 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01490 210 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 34 197 IPR027725 -
Viun3g01490 210 SUPERFAMILY "Winged helix" DNA-binding domain 37 132 IPR036390 -
Viun3g01490 210 Pfam HSF-type DNA-binding 40 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01490 210 SMART hsfneu3 36 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01490 210 PRINTS Heat shock factor (HSF) domain signature 40 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01490 210 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01490 210 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun3g01490 210 FunFam Heat stress transcription factor A-6b 33 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01490 Viun-Chr3 9797920 9799626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01490 28 202 HSF AT5G62020 36.232 9.02e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun3g01490 HSF_DNA-bind 4.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01490 K09419 - gmx:100789792 339.732