Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01484 ATGCAGAGTCAGCAAACTGAGAAAGAAGAAGACGATGAAGGCCCACCACCGGGGTGGCAACCAATCTCCACTCATCCACCGCTATACCAACCGCAACCGCCGCCGCAGCTGCAACCCCAACCGCGACCGCCACGTCCATGTGGTTGGGGTCAGATGGTCTGCGGTTCTTGTCATCGCCTGCTTTCATATCCCCGAGGTGCCAAACATGTTAAATGTCCATGCTGTGAGACCGCCAACATTGTATTAGAAGGTATTACGGCTAAACTCGAGGGTGACTCAAATCAAGCAGACTTATTTCGTCAAATTCGGCTTCAAATTATTACTGGAGAAAAGGAGATGGTTGTTGAGAATCCTCCCACTAACGATCAGAAGGTCGAGGTCATGGAGGCCGTCCGTGATTTGCAACCTTCACCTGCTGAGGAGAAGAAACACAAGAGAAAAGAAAAGCCCTCTCAGCACAACTTCCCTTCCCAGTTCCCCAAGCGGAAGCGAACATCTTCAAGTGGGAATTCATCCGCGCTGATGTTGGCCAACCTTCGAATGAGGGATGGCTTGTCAATCTCATTGACGACATCAGAGCTAGAGGTTGTTGACAACTCGAACCGGGAGGCGCTTTTGGAATCTTTTTTGGAGTTTCAATCTCGTGCAATTGTTGTGGCACGCCACCTTGGTGCAGATTTGAAGAATAACCTGATGGTCGAGTTGGAATCAGCCAAATCAGACTTGGCTAATGCCCAAAAGCGTATTGATGAAATGTCTCATAAGGAATCTTTGTTAAACAAAGAATTGGACAAGTTGAAAAGGGAGAAGTTGAATCTTTTGACCAACTGTTCTTCATGGGAAACTTGGTGTCTTCAAGCCGAGAACGAGGAAGAAGAGGCCAAGGCTAAAATTACCCAGTTGAAACAAGACCTTTCAGATATGACTTCGGCTCGTGCAGATGATAGAAGGAAACTGGCGAGTGAACTTTTTCAACTAAAGAAATGCCTCTTGGCACAACACGAGGAAGGTTTTGCCAAGGCACTCCGGCAAGCGGCTTTGTTATTTAAGATTCCCCCTGATGATGATAGATTTGGTGTAGACCAAGATGTTTATCATGGCAAATTGGTTTCGATAAACGACATCCCCTACGGGTGTAAACACTGTTGA 1149 0.47 MQSQQTEKEEDDEGPPPGWQPISTHPPLYQPQPPPQLQPQPRPPRPCGWGQMVCGSCHRLLSYPRGAKHVKCPCCETANIVLEGITAKLEGDSNQADLFRQIRLQIITGEKEMVVENPPTNDQKVEVMEAVRDLQPSPAEEKKHKRKEKPSQHNFPSQFPKRKRTSSSGNSSALMLANLRMRDGLSISLTTSELEVVDNSNREALLESFLEFQSRAIVVARHLGADLKNNLMVELESAKSDLANAQKRIDEMSHKESLLNKELDKLKREKLNLLTNCSSWETWCLQAENEEEEAKAKITQLKQDLSDMTSARADDRRKLASELFQLKKCLLAQHEEGFAKALRQAALLFKIPPDDDRFGVDQDVYHGKLVSINDIPYGCKHC 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01484 382 MobiDBLite consensus disorder prediction 19 44 - -
Viun3g01484 382 MobiDBLite consensus disorder prediction 1 15 - -
Viun3g01484 382 Pfam LSD1 zinc finger 54 77 IPR005735 -
Viun3g01484 382 MobiDBLite consensus disorder prediction 153 170 - -
Viun3g01484 382 PANTHER PROTEIN LSD1 3 84 IPR040319 -
Viun3g01484 382 NCBIfam zinc finger domain, LSD1 subclass 51 81 IPR005735 -
Viun3g01484 382 MobiDBLite consensus disorder prediction 135 170 - -
Viun3g01484 382 Coils Coil 228 276 - -
Viun3g01484 382 MobiDBLite consensus disorder prediction 1 44 - -
Viun3g01484 382 Coils Coil 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01484 Viun-Chr3 9725964 9730352 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Viun3g01484 zf-LSD1 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01484 - - vun:114178687 708.753