Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01472 ATGATGGATGAAGATAGCAGCAATTCTTGGTTAAGGAGGACCAAATTCTCCCACACAGTTTGTCACCGGTTGGATTATTCCAGTTCCAGATTAGGGTCTTTCAGCATTCAGCCAAGGACACATCACAGTTCCGGTCTGAAATCAAGGCCAGATGTAACTTTTGTTTCCGAAACCTCCTCGCAGGTTCGGAAAAAGTCCATAATGAGCAAGCAGAGATCTTTGTCCCCTTTGCCTGAAACCTCTCTGTCTGAAACCTTCAAGGAAGCTAGACATGAGTGGAAGAGGTTCTCCACACCTGGTCCAAGGAGGAAAGAGCATGATAAGAGAATCATGGGGAAGTTACTGAACAAGGATTCTCATGTGTCCAGTTCTAAATCCCCTTACAGCAGTCCAATGACCAAATCCCCTTACAACAGTCCAATGACCAAATCCCCTTACAGCAGTCCAATTAGACACCTTGCTTCAATGAAATTAAGCGACAAGTCCAAGCAGCGCAAGGATTCAGGATGGACGAGGTATTTTGACCATGGAGGAGGAAAGGTGACTGCTGTGGAAACAGCTGAGGAATGGAATGTTGATCTCTCTAAGCTCTTTGTTGGTGTTAGGTTTGCTCATGGGGCTCACAGCAGGCTTTACCATGGCATGTATAAAGATGAAGCTGTGGCTGTAAAAATTATCAGGGTACCAGATGATGACGAAAATGGAATGTTAGCCGATCGATTAGAGAAACAATTCATTAGAGAAGTAAGCCTTTTATCTCGTCTCCACCATCGAAATATTATCAAGTTCGTAGCAGCATGCAGAAAGCCACCTGTCTACTGTGTTATCACAGAATATCTATCAGAAGGTTCCTTGAGGTCATATTTGCATAAGTTGGAGACAAAAACTATTCCTCTACAGAAGCTAATTACTTTTGCTCTGGATATTGCTCGTGGGATGGAATACATACACTCTCAAGGTGTCATTCACCGAGACCTTAAACCAGAGAATGTCCTTATTAGTGAAGACTTTCACCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCTTACTGTGACTTATTTGCTGATGACCCTGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGAAAATCCTATGGGAGAAAGGTTGATGTATATAGTTTCGGGCTTATCTTATGGGAAATGGTTACTGGAACTATACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGACCAGTTATTCCTTCAGACTGTCCAGCTGCAATGAGAGCTTTAATCGAGCAATGTTGGTCTTTGAATCCGGACAAGAGGCCTGAGTTCTGGCAGGTTGTTAAGGTATTAGAACAATTTGAATCTTCGCTTGCTCGTGATGGAACCCTGACTCTGGTGCAAAACCTTTGTTGCCAAGATCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGTCCGGTGCATCAAAACAATGGTCCTGTGCCTAAACCCAAATTTACATAA 1515 0.4317 MMDEDSSNSWLRRTKFSHTVCHRLDYSSSRLGSFSIQPRTHHSSGLKSRPDVTFVSETSSQVRKKSIMSKQRSLSPLPETSLSETFKEARHEWKRFSTPGPRRKEHDKRIMGKLLNKDSHVSSSKSPYSSPMTKSPYNSPMTKSPYSSPIRHLASMKLSDKSKQRKDSGWTRYFDHGGGKVTAVETAEEWNVDLSKLFVGVRFAHGAHSRLYHGMYKDEAVAVKIIRVPDDDENGMLADRLEKQFIREVSLLSRLHHRNIIKFVAACRKPPVYCVITEYLSEGSLRSYLHKLETKTIPLQKLITFALDIARGMEYIHSQGVIHRDLKPENVLISEDFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVTGTIPYEDMTPIQAAFAVVNKNSRPVIPSDCPAAMRALIEQCWSLNPDKRPEFWQVVKVLEQFESSLARDGTLTLVQNLCCQDHKKGLLHWIQKLGPVHQNNGPVPKPKFT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01472 504 FunFam serine/threonine-protein kinase HT1 282 475 - -
Viun3g01472 504 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 95 460 - -
Viun3g01472 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Viun3g01472 504 SUPERFAMILY Protein kinase-like (PK-like) 183 453 IPR011009 -
Viun3g01472 504 ProSiteProfiles Protein kinase domain profile. 197 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01472 504 FunFam Serine/threonine-protein kinase isoform 1 187 281 - -
Viun3g01472 504 PRINTS Tyrosine kinase catalytic domain signature 424 446 IPR001245 GO:0004672|GO:0006468
Viun3g01472 504 PRINTS Tyrosine kinase catalytic domain signature 361 371 IPR001245 GO:0004672|GO:0006468
Viun3g01472 504 PRINTS Tyrosine kinase catalytic domain signature 277 290 IPR001245 GO:0004672|GO:0006468
Viun3g01472 504 PRINTS Tyrosine kinase catalytic domain signature 315 333 IPR001245 GO:0004672|GO:0006468
Viun3g01472 504 PRINTS Tyrosine kinase catalytic domain signature 380 402 IPR001245 GO:0004672|GO:0006468
Viun3g01472 504 Gene3D Transferase(Phosphotransferase) domain 1 282 479 - -
Viun3g01472 504 Pfam Protein tyrosine and serine/threonine kinase 203 453 IPR001245 GO:0004672|GO:0006468
Viun3g01472 504 MobiDBLite consensus disorder prediction 118 148 - -
Viun3g01472 504 SMART serkin_6 197 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g01472 504 CDD STKc_MAP3K-like 204 453 - -
Viun3g01472 504 Gene3D Phosphorylase Kinase; domain 1 185 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01472 Viun-Chr3 9656927 9661394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01472 2 504 MAP Kinase Kinase Kinase AT5G58950 56.801 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun3g01472 PK_Tyr_Ser-Thr 3.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01472 - - gmx:100784454 895.96