LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01471	ATGGAGAACAACCCTAGTTCATCAAAAAGTGGTAGAAAATTGGTTGAGAGGGATAGAAGAAATCAAATGAAGGATCTTTTCTCCAAGCTCAACTCAGTTCTTCCTCCTCAAAGCTCAAGGGAGGGAATTTCGCGTCCAGATCAGATAGGTGAAGCCATAGACTACATAAAGAACTTGCAGATTAAGTTGGAGAAAATGAAGGAGAAAAAGGGTAACTTAACAGACATCGTAAGGTCAAGAAATGCTACCATGAATATGGAATTCAAATCTCCACAGTTTAAGATCCAACAAATAGGTTCAGTCTTGGAGGTTGTTCTAGTAACTGGGTTGGATTGTCCTTTCATTTTCAATGAGACCATTCGTATTCTTCAAGAAGAAGGATCTGATATAGTTAATGCCAGTTATACAGTTCTTCAAAATGCAGTTCTCCATAAAATACACTCTCAGGTAGATGAATCTGGCAATGCAGCTTCGAGGATATCCGAGAAACTGAAGAATTGTGTCAATGGTCGGTAG	516	0.3895	MENNPSSSKSGRKLVERDRRNQMKDLFSKLNSVLPPQSSREGISRPDQIGEAIDYIKNLQIKLEKMKEKKGNLTDIVRSRNATMNMEFKSPQFKIQQIGSVLEVVLVTGLDCPFIFNETIRILQEEGSDIVNASYTVLQNAVLHKIHSQVDESGNAASRISEKLKNCVNGR	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01471	171	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	5	73	IPR036638	GO:0046983
	Viun3g01471	171	Pfam	Helix-loop-helix DNA-binding domain	12	60	IPR011598	GO:0046983
	Viun3g01471	171	Coils	Coil	49	76	-	-
	Viun3g01471	171	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	7	59	IPR011598	GO:0046983
	Viun3g01471	171	PANTHER	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	6	168	-	-
	Viun3g01471	171	SMART	finulus	13	65	IPR011598	GO:0046983
	Viun3g01471	171	Gene3D	-	1	90	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01471	Viun-Chr3	9646710	9647796	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g01471	5	170	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G20970	40.323	2.74e-38	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Viun3g01471		HLH	2.8e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01471	-		-	gmx:100810793	251.521