Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01465 ATGGACAACTTTCATGTGCCGTTTTCAGCAACCACCACCAACCCACTAATCCCTAATGTCTCTACTTCGAACGTAAGAATCCCTGCTCAACAAAACATGGCAGAACTAACAAATTTTAACGTCCCTGTTCAAAAAACTGGAGAAGGTGGCTTTCCTGATCCTTATTTCGCTCCATATAATCAAAACATGCAGTTCCAACAAATGAATCAATATCCTTTGCATACCCTTCCGACAGGACAACCTAGTGCAATTCGTGGACCACCAAATTCTGAAGTTCAAGTTCAAGCCTCTGTGGGACCATTGACTAGCAAAGTTGCCAGGGACAAAAGGAAACAAGTAAGACAGAAAAGTAAGAGTGTTGCTCCTACGGCTCCTTCGATTCCAACCAAAGGGACAGCAAAGGAAAAACCTGTTTCTGGACGAGGATCAGATGGAAAACTCACTGCCAAGAAAGATAAAACTATCACTATTTTTTGCACCCCAGATGGGAAGATGTTAGAGGAAGTTTTCACAAAGCAGTTGAAGAATAGTGACGTTAGTGCCCTAGGTCGCATTGTGCTCCCAAAGAGGGAGGTTGAGGCCAAGCTTCCACCATTGACAGACAAGGAAGGGAAGGATATCATGGTCAAGGATGTTTATTCTGGGAAGATGTGGACCTTGAAATACAAATATTGGTCTAATAACAGAAGTAGAATGTATGTTCTTGAAAGTGCAGGGGAGTTAGTGAACCATTATGAGCTACAACTGGGAGATTTTATAACCATTTTCACGGACGAAAGGAAAAATCTGTATGTGTGGGCTAGAAAAAACAAAAATGTGGAAGCACCGGTGTGCTTGTCAAACATGGAAAGCTCGAAAACATCCGAGACAGACAACCTTAACGACATGAAATCTACATATGAAGATGCATATATGGAATTTCTCACAAAGCTGAACCGTAAGAAAGAAGCTGATGCTAAAAGGCTTTTGAATTCACTCAATGCTGGTGGAAGTTCTTCAAGTGGAGCAAAATCAGATGTGAATATAGCACACCATGATCAATTGTCGAACACTGCTGGGAAAGGGGCACCAAGCCAAACAACTGCAGAAGCCACAGCACCAGCACCAACAACACCCCTTGATGGCAATAACATGCCGATAAGTGATGAAGATGTCTATGGGGGCCTTGACAACATCTTTGAAATTGAGAATAGTTCATGGTTTTGA 1206 0.4229 MDNFHVPFSATTTNPLIPNVSTSNVRIPAQQNMAELTNFNVPVQKTGEGGFPDPYFAPYNQNMQFQQMNQYPLHTLPTGQPSAIRGPPNSEVQVQASVGPLTSKVARDKRKQVRQKSKSVAPTAPSIPTKGTAKEKPVSGRGSDGKLTAKKDKTITIFCTPDGKMLEEVFTKQLKNSDVSALGRIVLPKREVEAKLPPLTDKEGKDIMVKDVYSGKMWTLKYKYWSNNRSRMYVLESAGELVNHYELQLGDFITIFTDERKNLYVWARKNKNVEAPVCLSNMESSKTSETDNLNDMKSTYEDAYMEFLTKLNRKKEADAKRLLNSLNAGGSSSSGAKSDVNIAHHDQLSNTAGKGAPSQTTAEATAPAPTTPLDGNNMPISDEDVYGGLDNIFEIENSSWF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01465 401 Pfam B3 DNA binding domain 170 269 IPR003340 GO:0003677
Viun3g01465 401 CDD B3_DNA 170 265 IPR003340 GO:0003677
Viun3g01465 401 Gene3D - 159 276 IPR015300 -
Viun3g01465 401 MobiDBLite consensus disorder prediction 348 377 - -
Viun3g01465 401 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 115 327 IPR044800 GO:0003700
Viun3g01465 401 SMART B3_2 170 271 IPR003340 GO:0003677
Viun3g01465 401 MobiDBLite consensus disorder prediction 348 382 - -
Viun3g01465 401 MobiDBLite consensus disorder prediction 97 147 - -
Viun3g01465 401 ProSiteProfiles B3 DNA-binding domain profile. 170 271 IPR003340 GO:0003677
Viun3g01465 401 SUPERFAMILY DNA-binding pseudobarrel domain 169 269 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01465 Viun-Chr3 9575872 9578410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01465 160 327 B3 DNA Binding Superfamily AT1G28300 43.787 9.05e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun3g01465 B3 1.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01465 K09287 - gmx:106797573 259.61