Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01459 ATGGACTCGAGCAGGTCTGAGGGAAAGAGGGTGTTGAGGAACGACGAGGAAGAGGAAGATGAGGAAGAAGAAGAAGAAGAGGAAGAGGTTGAAACGGATTTTGGAGAAGATGGAAGGAGGAATAAGAGAGTAATGAGAGATCTGTATGGAAAGAAAGGGTGGAAAGGTGGAGGCTCAATGCCACCTTCTTGTCAGGTGGATAACTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTTGGAATCACCGTTTTGAACTTAAAGGTTGACAAAACTCATTGGGTTTTATGGGTTAATTTTAACCAGTGGCATGTTGTTGACAATCTTGATGCATGA 429 0.4406 MDSSRSEGKRVLRNDEEEEDEEEEEEEEEVETDFGEDGRRNKRVMRDLYGKKGWKGGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRFGITVLNLKVDKTHWVLWVNFNQWHVVDNLDA 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01459 142 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 111 IPR044817 GO:0003677
Viun3g01459 142 Coils Coil 9 33 - -
Viun3g01459 142 Gene3D - 55 139 IPR036893 GO:0003677|GO:0005634
Viun3g01459 142 MobiDBLite consensus disorder prediction 16 33 - -
Viun3g01459 142 ProSiteProfiles Zinc finger SBP-type profile. 61 138 IPR004333 GO:0003677
Viun3g01459 142 MobiDBLite consensus disorder prediction 1 15 - -
Viun3g01459 142 Pfam SBP domain 64 111 IPR004333 GO:0003677
Viun3g01459 142 MobiDBLite consensus disorder prediction 1 39 - -
Viun3g01459 142 SUPERFAMILY SBT domain 62 112 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01459 Viun-Chr3 9502107 9503826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01459 57 111 SBP-box Gene Family AT1G53160 72.727 9.14e-23 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun3g01459 SBP 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01459 - - pvu:PHAVU_002G230300g 183.341